miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14058 5' -67.6 NC_003521.1 + 201666 0.67 0.433902
Target:  5'- cUGggCCgCGAGCUGcGCCGCCGGUg- -3'
miRNA:   3'- aACa-GGgGCUCGGCcCGGCGGCCGgg -5'
14058 5' -67.6 NC_003521.1 + 201610 0.68 0.379542
Target:  5'- cUGUCCCCGAGCCcGcGCUGCUGcggacGCUg -3'
miRNA:   3'- aACAGGGGCUCGGcC-CGGCGGC-----CGGg -5'
14058 5' -67.6 NC_003521.1 + 201383 0.74 0.175395
Target:  5'- -cGUCCCCGGGagccaCGGcGCCGCCuacgggacuggacGGCCUg -3'
miRNA:   3'- aaCAGGGGCUCg----GCC-CGGCGG-------------CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 201380 0.69 0.336721
Target:  5'- -gGcCCUCGGcGCCGGGCUcgGCCGGCa- -3'
miRNA:   3'- aaCaGGGGCU-CGGCCCGG--CGGCCGgg -5'
14058 5' -67.6 NC_003521.1 + 197338 0.66 0.527605
Target:  5'- gUUGgCCgCCGcGGCCagcacGGCCGCCgcgcuGGCCCg -3'
miRNA:   3'- -AACaGG-GGC-UCGGc----CCGGCGG-----CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 196965 0.66 0.491654
Target:  5'- ----gCCCGggagccGGCCGGGgCGCCugugacgGGCCCg -3'
miRNA:   3'- aacagGGGC------UCGGCCCgGCGG-------CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 196456 0.69 0.350594
Target:  5'- -cGgCCUCGGGCgUGGGCCGCa-GCCCc -3'
miRNA:   3'- aaCaGGGGCUCG-GCCCGGCGgcCGGG- -5'
14058 5' -67.6 NC_003521.1 + 196435 0.69 0.357682
Target:  5'- cUGUCgCCCGGGUCGgccGGCUGCCGcGCg- -3'
miRNA:   3'- aACAG-GGGCUCGGC---CCGGCGGC-CGgg -5'
14058 5' -67.6 NC_003521.1 + 196279 0.7 0.303176
Target:  5'- -cGUCCUcaugugagcgCGuGCCGGGCCGCUugaugcuGGCCa -3'
miRNA:   3'- aaCAGGG----------GCuCGGCCCGGCGG-------CCGGg -5'
14058 5' -67.6 NC_003521.1 + 195907 0.66 0.527605
Target:  5'- -cGUCCUCGucuucGUCcucGCCGCCGcGCCCg -3'
miRNA:   3'- aaCAGGGGCu----CGGcc-CGGCGGC-CGGG- -5'
14058 5' -67.6 NC_003521.1 + 191698 0.67 0.466922
Target:  5'- -aGUCCCCGcAGCagCGGcGCCG-CGGUCa -3'
miRNA:   3'- aaCAGGGGC-UCG--GCC-CGGCgGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 188470 0.67 0.450246
Target:  5'- -cGcCUCCGAGCUacgagcaGGCCGUgGGCCUg -3'
miRNA:   3'- aaCaGGGGCUCGGc------CCGGCGgCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 187620 0.69 0.329262
Target:  5'- cUG-CCgggCGAGCCGGGCCGCgcgccgcUGGCCa -3'
miRNA:   3'- aACaGGg--GCUCGGCCCGGCG-------GCCGGg -5'
14058 5' -67.6 NC_003521.1 + 186328 0.79 0.075325
Target:  5'- -gGUCCac--GCCGGGCCGCCGGCCa -3'
miRNA:   3'- aaCAGGggcuCGGCCCGGCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 185570 0.69 0.343607
Target:  5'- uUUGUCCCCc-G-CGGGCuCGCCGGCgagCCg -3'
miRNA:   3'- -AACAGGGGcuCgGCCCG-GCGGCCG---GG- -5'
14058 5' -67.6 NC_003521.1 + 185054 0.7 0.303808
Target:  5'- --aUCUUCGAGCUGuaCCGCCGGCCg -3'
miRNA:   3'- aacAGGGGCUCGGCccGGCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 181199 0.66 0.492518
Target:  5'- -cGcCUgCGAGCCGcGGUCGCCgccggGGCCg -3'
miRNA:   3'- aaCaGGgGCUCGGC-CCGGCGG-----CCGGg -5'
14058 5' -67.6 NC_003521.1 + 179454 0.68 0.379542
Target:  5'- -gGUCCuuGAGCuguugcaggaagCGGGCCGUgGGCa- -3'
miRNA:   3'- aaCAGGggCUCG------------GCCCGGCGgCCGgg -5'
14058 5' -67.6 NC_003521.1 + 175768 0.66 0.518741
Target:  5'- -gGUCCCCGGGCuCGuuguuagaGGCauaccccacaGCCucGGCCCu -3'
miRNA:   3'- aaCAGGGGCUCG-GC--------CCGg---------CGG--CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 167832 0.68 0.379542
Target:  5'- ---cCCCCGGGCaCGaccGCCGCgGGCUCg -3'
miRNA:   3'- aacaGGGGCUCG-GCc--CGGCGgCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.