miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14058 5' -67.6 NC_003521.1 + 240712 0.72 0.235047
Target:  5'- -aGUCCCCGcGaCGacCCGCCGGCCCg -3'
miRNA:   3'- aaCAGGGGCuCgGCccGGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 238828 0.68 0.39232
Target:  5'- gUGUCCCUGGguguucGCCGuaugcguuauuagaGGCgCGCCGGCUg -3'
miRNA:   3'- aACAGGGGCU------CGGC--------------CCG-GCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 236674 0.75 0.15321
Target:  5'- -gGUCCUgGGGaaGGggagaGCCGCCGGCCCg -3'
miRNA:   3'- aaCAGGGgCUCggCC-----CGGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 234994 0.66 0.527605
Target:  5'- -aGggCCCCGGucGCCGGGaC-CCGGCaCCa -3'
miRNA:   3'- aaCa-GGGGCU--CGGCCCgGcGGCCG-GG- -5'
14058 5' -67.6 NC_003521.1 + 229070 0.7 0.310188
Target:  5'- -cGUCCCCagggcGAGUCGGGCCcGUcgaugaCGGCCg -3'
miRNA:   3'- aaCAGGGG-----CUCGGCCCGG-CG------GCCGGg -5'
14058 5' -67.6 NC_003521.1 + 226076 0.68 0.379542
Target:  5'- -cG-CCCCG-GCC--GCgGCCGGCCCg -3'
miRNA:   3'- aaCaGGGGCuCGGccCGgCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 224299 0.68 0.387024
Target:  5'- -gGUCCguugcgcuccagCCGAGCCGaGcGCCGCa-GCCCg -3'
miRNA:   3'- aaCAGG------------GGCUCGGC-C-CGGCGgcCGGG- -5'
14058 5' -67.6 NC_003521.1 + 223451 0.77 0.102851
Target:  5'- -gGUCCCucuCGAGuCUGGGCCGCCGcGCCg -3'
miRNA:   3'- aaCAGGG---GCUC-GGCCCGGCGGC-CGGg -5'
14058 5' -67.6 NC_003521.1 + 223315 0.68 0.417908
Target:  5'- -cG-CCgCCGGGCCGGGaaCCGCCGuGaCCg -3'
miRNA:   3'- aaCaGG-GGCUCGGCCC--GGCGGC-CgGG- -5'
14058 5' -67.6 NC_003521.1 + 222219 0.67 0.458544
Target:  5'- cUUGUCCugaCCGcGGCUGGGCCGCaGGaaCCa -3'
miRNA:   3'- -AACAGG---GGC-UCGGCCCGGCGgCCg-GG- -5'
14058 5' -67.6 NC_003521.1 + 216428 0.66 0.527605
Target:  5'- aUGcUCCgCGGGCCcGG-CGCCGGCUUu -3'
miRNA:   3'- aAC-AGGgGCUCGGcCCgGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 214687 0.66 0.501193
Target:  5'- --uUCUCCGAaaGaaGGGCggaagcaGCCGGCCCg -3'
miRNA:   3'- aacAGGGGCU--CggCCCGg------CGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 213444 0.66 0.492518
Target:  5'- --aUCCCCGuGGCCuGGCCccCCGGCUg -3'
miRNA:   3'- aacAGGGGC-UCGGcCCGGc-GGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 213014 0.68 0.372156
Target:  5'- cUGUaCCauGGcGCCGGGCgaGCCGGCCg -3'
miRNA:   3'- aACA-GGggCU-CGGCCCGg-CGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 209817 0.68 0.410047
Target:  5'- -cGUCCUC--GCCGGcGCCGUCGucGCCCc -3'
miRNA:   3'- aaCAGGGGcuCGGCC-CGGCGGC--CGGG- -5'
14058 5' -67.6 NC_003521.1 + 209321 0.67 0.475379
Target:  5'- cUUG-CCCaCGGGCUGGGCCuguGCCaaCCCg -3'
miRNA:   3'- -AACaGGG-GCUCGGCCCGG---CGGccGGG- -5'
14058 5' -67.6 NC_003521.1 + 207348 0.79 0.073528
Target:  5'- -cGUCCCuCGGGUCGGcGCgGCCGGCCg -3'
miRNA:   3'- aaCAGGG-GCUCGGCC-CGgCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 205812 0.67 0.433902
Target:  5'- -cGUCCgCCGGGCaCGacgcaagcGCuCGCUGGCCCc -3'
miRNA:   3'- aaCAGG-GGCUCG-GCc-------CG-GCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 202594 0.67 0.458544
Target:  5'- -cG-CCCCGcccGCCGaGGCCGCCcugcGCCUc -3'
miRNA:   3'- aaCaGGGGCu--CGGC-CCGGCGGc---CGGG- -5'
14058 5' -67.6 NC_003521.1 + 202287 0.73 0.205845
Target:  5'- gUGUCCCCaccucugucGAGCU---CCGCCGGCCCg -3'
miRNA:   3'- aACAGGGG---------CUCGGcccGGCGGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.