miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14060 3' -60.5 NC_003521.1 + 98875 0.67 0.838405
Target:  5'- aCCGCCgCUCgugcuaGGGGgcGCCGUcGUCgCGGc -3'
miRNA:   3'- -GGCGGgGAGg-----CCCCa-UGGCA-UAG-GCC- -5'
14060 3' -60.5 NC_003521.1 + 106388 0.69 0.724125
Target:  5'- gCCGCCuCCUCCGucgucGGGUGgCGUgaagagguucugaaaGUCCGu -3'
miRNA:   3'- -GGCGG-GGAGGC-----CCCAUgGCA---------------UAGGCc -5'
14060 3' -60.5 NC_003521.1 + 107450 0.68 0.782219
Target:  5'- aCCGCCgCgcugugCCGGcGG-ACCGUgcugaucuccacGUCCGGc -3'
miRNA:   3'- -GGCGGgGa-----GGCC-CCaUGGCA------------UAGGCC- -5'
14060 3' -60.5 NC_003521.1 + 117266 0.66 0.873932
Target:  5'- cCCGCCaCCgCCGucGUcgGCCGUGgugCCGGc -3'
miRNA:   3'- -GGCGG-GGaGGCccCA--UGGCAUa--GGCC- -5'
14060 3' -60.5 NC_003521.1 + 117614 0.67 0.807113
Target:  5'- gCCGCCCCcgUCCuacccGGcGCCGUAUgCGGc -3'
miRNA:   3'- -GGCGGGG--AGGcc---CCaUGGCAUAgGCC- -5'
14060 3' -60.5 NC_003521.1 + 118220 0.75 0.422326
Target:  5'- gCCGCCgCCgucgCCGGGGUGgucaaugccUCGUGUCgGGu -3'
miRNA:   3'- -GGCGG-GGa---GGCCCCAU---------GGCAUAGgCC- -5'
14060 3' -60.5 NC_003521.1 + 118838 0.66 0.880509
Target:  5'- gCUGCCCgUCaGGGGUACCagguUGUCUa- -3'
miRNA:   3'- -GGCGGGgAGgCCCCAUGGc---AUAGGcc -5'
14060 3' -60.5 NC_003521.1 + 123335 0.72 0.571347
Target:  5'- aCGCCCCgCCGGacaGgcCCGUcgCCGGg -3'
miRNA:   3'- gGCGGGGaGGCCc--CauGGCAuaGGCC- -5'
14060 3' -60.5 NC_003521.1 + 129635 0.68 0.765044
Target:  5'- cCCaGCCCaccgUCCGcGGcGCCGUcgCCGGg -3'
miRNA:   3'- -GG-CGGGg---AGGCcCCaUGGCAuaGGCC- -5'
14060 3' -60.5 NC_003521.1 + 139714 0.7 0.683655
Target:  5'- cCCGcCCCCUCgCGGGGUuUCGUcAUCUa- -3'
miRNA:   3'- -GGC-GGGGAG-GCCCCAuGGCA-UAGGcc -5'
14060 3' -60.5 NC_003521.1 + 144859 0.66 0.853127
Target:  5'- aUCGCUCC-CCGcGGGUccccgaACCGcAUCCGu -3'
miRNA:   3'- -GGCGGGGaGGC-CCCA------UGGCaUAGGCc -5'
14060 3' -60.5 NC_003521.1 + 146829 0.68 0.790639
Target:  5'- uCCGCCUgUCUGGGGggcGCCucGUCCu- -3'
miRNA:   3'- -GGCGGGgAGGCCCCa--UGGcaUAGGcc -5'
14060 3' -60.5 NC_003521.1 + 148656 0.69 0.73676
Target:  5'- aUCGCCCCgacccCCGGGcGaGCCGguggaaggagCCGGg -3'
miRNA:   3'- -GGCGGGGa----GGCCC-CaUGGCaua-------GGCC- -5'
14060 3' -60.5 NC_003521.1 + 148702 0.66 0.853127
Target:  5'- cCCGCCCgaaccgcacCCGGGGguuCCGac-CCGGg -3'
miRNA:   3'- -GGCGGGga-------GGCCCCau-GGCauaGGCC- -5'
14060 3' -60.5 NC_003521.1 + 148870 0.69 0.711359
Target:  5'- uCCGCCCUcgccgccaCGGGGU-CCGccgCCGGg -3'
miRNA:   3'- -GGCGGGGag------GCCCCAuGGCauaGGCC- -5'
14060 3' -60.5 NC_003521.1 + 148920 0.72 0.580638
Target:  5'- gCCGUCCUggaUCCGGGGguCCGUccGUCCGu -3'
miRNA:   3'- -GGCGGGG---AGGCCCCauGGCA--UAGGCc -5'
14060 3' -60.5 NC_003521.1 + 149419 0.66 0.867174
Target:  5'- gUCGCCCUgugggCCGGGauuuGggUCGgggGUCCGGg -3'
miRNA:   3'- -GGCGGGGa----GGCCC----CauGGCa--UAGGCC- -5'
14060 3' -60.5 NC_003521.1 + 150134 0.68 0.782219
Target:  5'- gUGUauauaCCggagCgGGGGUauauACCGUAUCCGGg -3'
miRNA:   3'- gGCGg----GGa---GgCCCCA----UGGCAUAGGCC- -5'
14060 3' -60.5 NC_003521.1 + 150200 1.11 0.00189
Target:  5'- aCCGCCCCUCCGGGGUACCGUAUCCGGu -3'
miRNA:   3'- -GGCGGGGAGGCCCCAUGGCAUAGGCC- -5'
14060 3' -60.5 NC_003521.1 + 150268 0.66 0.853126
Target:  5'- aCCGCggccggCCUCuCGuGGGUGCUGUcgCgGGg -3'
miRNA:   3'- -GGCGg-----GGAG-GC-CCCAUGGCAuaGgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.