miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14060 3' -60.5 NC_003521.1 + 2190 0.71 0.627455
Target:  5'- aCCGCCCgUUCGGGGaACgGacggCCGGc -3'
miRNA:   3'- -GGCGGGgAGGCCCCaUGgCaua-GGCC- -5'
14060 3' -60.5 NC_003521.1 + 5686 0.72 0.571347
Target:  5'- gCGCCCgUCCGcGGGgaacgggcGCCGUcaCCGGg -3'
miRNA:   3'- gGCGGGgAGGC-CCCa-------UGGCAuaGGCC- -5'
14060 3' -60.5 NC_003521.1 + 16805 0.68 0.773685
Target:  5'- cCCGCCCCgaccgCCGGGcccGCCGcugCCGc -3'
miRNA:   3'- -GGCGGGGa----GGCCCca-UGGCauaGGCc -5'
14060 3' -60.5 NC_003521.1 + 17341 0.68 0.782219
Target:  5'- uCCGCCCCaccucCCGGG---CCGUGacgCCGGc -3'
miRNA:   3'- -GGCGGGGa----GGCCCcauGGCAUa--GGCC- -5'
14060 3' -60.5 NC_003521.1 + 17742 0.69 0.729558
Target:  5'- cCCGUCggCCgaggCCGGGGaacugGCCGUAccgCCGGc -3'
miRNA:   3'- -GGCGG--GGa---GGCCCCa----UGGCAUa--GGCC- -5'
14060 3' -60.5 NC_003521.1 + 23225 0.67 0.807113
Target:  5'- aCGCCCCugcuggUCCGGGGcggACCcgggGUCCu- -3'
miRNA:   3'- gGCGGGG------AGGCCCCa--UGGca--UAGGcc -5'
14060 3' -60.5 NC_003521.1 + 31750 0.66 0.873932
Target:  5'- uCCGCCgCCUCgaccggcacauCGGGGUcgcGCCaGUcgCCGc -3'
miRNA:   3'- -GGCGG-GGAG-----------GCCCCA---UGG-CAuaGGCc -5'
14060 3' -60.5 NC_003521.1 + 36849 0.69 0.747471
Target:  5'- gUCGUCCUacgccUCGGcGGUGUCGUGUCCGGa -3'
miRNA:   3'- -GGCGGGGa----GGCC-CCAUGGCAUAGGCC- -5'
14060 3' -60.5 NC_003521.1 + 39753 0.7 0.664994
Target:  5'- uUCGCCCCUCCGucucuguuccaGGGgcUCGUaGUCCaGGu -3'
miRNA:   3'- -GGCGGGGAGGC-----------CCCauGGCA-UAGG-CC- -5'
14060 3' -60.5 NC_003521.1 + 43941 0.72 0.562092
Target:  5'- uCCGCCCCggccucacCCGcGGUGCCGUugCUGGa -3'
miRNA:   3'- -GGCGGGGa-------GGCcCCAUGGCAuaGGCC- -5'
14060 3' -60.5 NC_003521.1 + 47564 0.71 0.627455
Target:  5'- cCCGCUCCgcagCCG----ACCGUAUCCGGg -3'
miRNA:   3'- -GGCGGGGa---GGCcccaUGGCAUAGGCC- -5'
14060 3' -60.5 NC_003521.1 + 52153 0.66 0.873932
Target:  5'- cCCGCCCgUCagcgacGGUACCGcggGUCCGc -3'
miRNA:   3'- -GGCGGGgAGgcc---CCAUGGCa--UAGGCc -5'
14060 3' -60.5 NC_003521.1 + 53536 0.67 0.838405
Target:  5'- gCUGUCCgCUCCGGgucgaGGUGCCGcUGUCgCGu -3'
miRNA:   3'- -GGCGGG-GAGGCC-----CCAUGGC-AUAG-GCc -5'
14060 3' -60.5 NC_003521.1 + 61762 0.66 0.880509
Target:  5'- gCCGuuCCCCgucaCCGGGaccgccGCCGgcUCCGGc -3'
miRNA:   3'- -GGC--GGGGa---GGCCCca----UGGCauAGGCC- -5'
14060 3' -60.5 NC_003521.1 + 80317 0.71 0.636851
Target:  5'- gCCGCCCCcuccucccgCCGcGGUcuGCUGUGUCCGu -3'
miRNA:   3'- -GGCGGGGa--------GGCcCCA--UGGCAUAGGCc -5'
14060 3' -60.5 NC_003521.1 + 90341 0.66 0.853126
Target:  5'- aCGCCCC-CUGGcaGGgcuauacACCGUA-CCGGa -3'
miRNA:   3'- gGCGGGGaGGCC--CCa------UGGCAUaGGCC- -5'
14060 3' -60.5 NC_003521.1 + 91251 0.66 0.886899
Target:  5'- -gGCCCU--CGGGGUcCCG--UCCGGg -3'
miRNA:   3'- ggCGGGGagGCCCCAuGGCauAGGCC- -5'
14060 3' -60.5 NC_003521.1 + 92210 0.68 0.782219
Target:  5'- cCCGCCCCUgCUcGGGUcCCGggGUCCc- -3'
miRNA:   3'- -GGCGGGGA-GGcCCCAuGGCa-UAGGcc -5'
14060 3' -60.5 NC_003521.1 + 92249 0.68 0.790639
Target:  5'- cCCGUcgaCCCUCCcuGGGUGCCGcugCCGc -3'
miRNA:   3'- -GGCG---GGGAGGc-CCCAUGGCauaGGCc -5'
14060 3' -60.5 NC_003521.1 + 92470 0.68 0.773685
Target:  5'- uUGCCCgCUCgGGGGUcucccaGCCuc-UCCGGg -3'
miRNA:   3'- gGCGGG-GAGgCCCCA------UGGcauAGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.