miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14060 3' -60.5 NC_003521.1 + 190006 0.67 0.848779
Target:  5'- aCCGCUCCcaccaCCGGGGacaccgcugccaucACCGUcgCCGa -3'
miRNA:   3'- -GGCGGGGa----GGCCCCa-------------UGGCAuaGGCc -5'
14060 3' -60.5 NC_003521.1 + 92249 0.68 0.790639
Target:  5'- cCCGUcgaCCCUCCcuGGGUGCCGcugCCGc -3'
miRNA:   3'- -GGCG---GGGAGGc-CCCAUGGCauaGGCc -5'
14060 3' -60.5 NC_003521.1 + 146829 0.68 0.790639
Target:  5'- uCCGCCUgUCUGGGGggcGCCucGUCCu- -3'
miRNA:   3'- -GGCGGGgAGGCCCCa--UGGcaUAGGcc -5'
14060 3' -60.5 NC_003521.1 + 117614 0.67 0.807113
Target:  5'- gCCGCCCCcgUCCuacccGGcGCCGUAUgCGGc -3'
miRNA:   3'- -GGCGGGG--AGGcc---CCaUGGCAUAgGCC- -5'
14060 3' -60.5 NC_003521.1 + 164518 0.67 0.815152
Target:  5'- gCCGCCaCCUCCGc--UGCCGgacCCGGa -3'
miRNA:   3'- -GGCGG-GGAGGCcccAUGGCauaGGCC- -5'
14060 3' -60.5 NC_003521.1 + 166492 0.67 0.815152
Target:  5'- gCGCCauCCagCGGGGcGCCGcGUCCGa -3'
miRNA:   3'- gGCGG--GGagGCCCCaUGGCaUAGGCc -5'
14060 3' -60.5 NC_003521.1 + 153074 0.67 0.830804
Target:  5'- uCCGCCg--CCGGGGc-CCGgg-CCGGg -3'
miRNA:   3'- -GGCGGggaGGCCCCauGGCauaGGCC- -5'
14060 3' -60.5 NC_003521.1 + 53536 0.67 0.838405
Target:  5'- gCUGUCCgCUCCGGgucgaGGUGCCGcUGUCgCGu -3'
miRNA:   3'- -GGCGGG-GAGGCC-----CCAUGGC-AUAG-GCc -5'
14060 3' -60.5 NC_003521.1 + 98875 0.67 0.838405
Target:  5'- aCCGCCgCUCgugcuaGGGGgcGCCGUcGUCgCGGc -3'
miRNA:   3'- -GGCGGgGAGg-----CCCCa-UGGCA-UAG-GCC- -5'
14060 3' -60.5 NC_003521.1 + 92210 0.68 0.782219
Target:  5'- cCCGCCCCUgCUcGGGUcCCGggGUCCc- -3'
miRNA:   3'- -GGCGGGGA-GGcCCCAuGGCa-UAGGcc -5'
14060 3' -60.5 NC_003521.1 + 160314 0.68 0.782219
Target:  5'- gCCGCCUCcCCGGGGUcAUCGU-UgUGGu -3'
miRNA:   3'- -GGCGGGGaGGCCCCA-UGGCAuAgGCC- -5'
14060 3' -60.5 NC_003521.1 + 92470 0.68 0.773685
Target:  5'- uUGCCCgCUCgGGGGUcucccaGCCuc-UCCGGg -3'
miRNA:   3'- gGCGGG-GAGgCCCCA------UGGcauAGGCC- -5'
14060 3' -60.5 NC_003521.1 + 5686 0.72 0.571347
Target:  5'- gCGCCCgUCCGcGGGgaacgggcGCCGUcaCCGGg -3'
miRNA:   3'- gGCGGGgAGGC-CCCa-------UGGCAuaGGCC- -5'
14060 3' -60.5 NC_003521.1 + 202418 0.71 0.627455
Target:  5'- aCCGCCCgUUCGGGGaACgGacggCCGGc -3'
miRNA:   3'- -GGCGGGgAGGCCCCaUGgCaua-GGCC- -5'
14060 3' -60.5 NC_003521.1 + 39753 0.7 0.664994
Target:  5'- uUCGCCCCUCCGucucuguuccaGGGgcUCGUaGUCCaGGu -3'
miRNA:   3'- -GGCGGGGAGGC-----------CCCauGGCA-UAGG-CC- -5'
14060 3' -60.5 NC_003521.1 + 179489 0.7 0.674339
Target:  5'- aCGCUCCggcagcgCCGGGGaACaCGUGUCCc- -3'
miRNA:   3'- gGCGGGGa------GGCCCCaUG-GCAUAGGcc -5'
14060 3' -60.5 NC_003521.1 + 157272 0.69 0.702172
Target:  5'- gUCGCCUUUCCGGGGcaacggcgGCCGcGUaCGGg -3'
miRNA:   3'- -GGCGGGGAGGCCCCa-------UGGCaUAgGCC- -5'
14060 3' -60.5 NC_003521.1 + 106388 0.69 0.724125
Target:  5'- gCCGCCuCCUCCGucgucGGGUGgCGUgaagagguucugaaaGUCCGu -3'
miRNA:   3'- -GGCGG-GGAGGC-----CCCAUgGCA---------------UAGGCc -5'
14060 3' -60.5 NC_003521.1 + 17742 0.69 0.729558
Target:  5'- cCCGUCggCCgaggCCGGGGaacugGCCGUAccgCCGGc -3'
miRNA:   3'- -GGCGG--GGa---GGCCCCa----UGGCAUa--GGCC- -5'
14060 3' -60.5 NC_003521.1 + 152355 0.68 0.756304
Target:  5'- aCGCUgCUCUGGGG--CCGg--CCGGg -3'
miRNA:   3'- gGCGGgGAGGCCCCauGGCauaGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.