miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14060 3' -60.5 NC_003521.1 + 150200 1.11 0.00189
Target:  5'- aCCGCCCCUCCGGGGUACCGUAUCCGGu -3'
miRNA:   3'- -GGCGGGGAGGCCCCAUGGCAUAGGCC- -5'
14060 3' -60.5 NC_003521.1 + 118220 0.75 0.422326
Target:  5'- gCCGCCgCCgucgCCGGGGUGgucaaugccUCGUGUCgGGu -3'
miRNA:   3'- -GGCGG-GGa---GGCCCCAU---------GGCAUAGgCC- -5'
14060 3' -60.5 NC_003521.1 + 234471 0.73 0.525527
Target:  5'- aCCgGCCCCUCUGGGau-CCGgAUCUGGc -3'
miRNA:   3'- -GG-CGGGGAGGCCCcauGGCaUAGGCC- -5'
14060 3' -60.5 NC_003521.1 + 43941 0.72 0.562092
Target:  5'- uCCGCCCCggccucacCCGcGGUGCCGUugCUGGa -3'
miRNA:   3'- -GGCGGGGa-------GGCcCCAUGGCAuaGGCC- -5'
14060 3' -60.5 NC_003521.1 + 123335 0.72 0.571347
Target:  5'- aCGCCCCgCCGGacaGgcCCGUcgCCGGg -3'
miRNA:   3'- gGCGGGGaGGCCc--CauGGCAuaGGCC- -5'
14060 3' -60.5 NC_003521.1 + 5686 0.72 0.571347
Target:  5'- gCGCCCgUCCGcGGGgaacgggcGCCGUcaCCGGg -3'
miRNA:   3'- gGCGGGgAGGC-CCCa-------UGGCAuaGGCC- -5'
14060 3' -60.5 NC_003521.1 + 148920 0.72 0.580638
Target:  5'- gCCGUCCUggaUCCGGGGguCCGUccGUCCGu -3'
miRNA:   3'- -GGCGGGG---AGGCCCCauGGCA--UAGGCc -5'
14060 3' -60.5 NC_003521.1 + 47564 0.71 0.627455
Target:  5'- cCCGCUCCgcagCCG----ACCGUAUCCGGg -3'
miRNA:   3'- -GGCGGGGa---GGCcccaUGGCAUAGGCC- -5'
14060 3' -60.5 NC_003521.1 + 2190 0.71 0.627455
Target:  5'- aCCGCCCgUUCGGGGaACgGacggCCGGc -3'
miRNA:   3'- -GGCGGGgAGGCCCCaUGgCaua-GGCC- -5'
14060 3' -60.5 NC_003521.1 + 202418 0.71 0.627455
Target:  5'- aCCGCCCgUUCGGGGaACgGacggCCGGc -3'
miRNA:   3'- -GGCGGGgAGGCCCCaUGgCaua-GGCC- -5'
14060 3' -60.5 NC_003521.1 + 80317 0.71 0.636851
Target:  5'- gCCGCCCCcuccucccgCCGcGGUcuGCUGUGUCCGu -3'
miRNA:   3'- -GGCGGGGa--------GGCcCCA--UGGCAUAGGCc -5'
14060 3' -60.5 NC_003521.1 + 39753 0.7 0.664994
Target:  5'- uUCGCCCCUCCGucucuguuccaGGGgcUCGUaGUCCaGGu -3'
miRNA:   3'- -GGCGGGGAGGC-----------CCCauGGCA-UAGG-CC- -5'
14060 3' -60.5 NC_003521.1 + 179489 0.7 0.674339
Target:  5'- aCGCUCCggcagcgCCGGGGaACaCGUGUCCc- -3'
miRNA:   3'- gGCGGGGa------GGCCCCaUG-GCAUAGGcc -5'
14060 3' -60.5 NC_003521.1 + 184348 0.7 0.683655
Target:  5'- aCUGCCUCUUCGGGcGgGCCGUggCgCGGc -3'
miRNA:   3'- -GGCGGGGAGGCCC-CaUGGCAuaG-GCC- -5'
14060 3' -60.5 NC_003521.1 + 139714 0.7 0.683655
Target:  5'- cCCGcCCCCUCgCGGGGUuUCGUcAUCUa- -3'
miRNA:   3'- -GGC-GGGGAG-GCCCCAuGGCA-UAGGcc -5'
14060 3' -60.5 NC_003521.1 + 157272 0.69 0.702172
Target:  5'- gUCGCCUUUCCGGGGcaacggcgGCCGcGUaCGGg -3'
miRNA:   3'- -GGCGGGGAGGCCCCa-------UGGCaUAgGCC- -5'
14060 3' -60.5 NC_003521.1 + 148870 0.69 0.711359
Target:  5'- uCCGCCCUcgccgccaCGGGGU-CCGccgCCGGg -3'
miRNA:   3'- -GGCGGGGag------GCCCCAuGGCauaGGCC- -5'
14060 3' -60.5 NC_003521.1 + 106388 0.69 0.724125
Target:  5'- gCCGCCuCCUCCGucgucGGGUGgCGUgaagagguucugaaaGUCCGu -3'
miRNA:   3'- -GGCGG-GGAGGC-----CCCAUgGCA---------------UAGGCc -5'
14060 3' -60.5 NC_003521.1 + 223314 0.69 0.729558
Target:  5'- gCGCCgCCgggCCGGGaaccGCCGUGaCCGGc -3'
miRNA:   3'- gGCGG-GGa--GGCCCca--UGGCAUaGGCC- -5'
14060 3' -60.5 NC_003521.1 + 17742 0.69 0.729558
Target:  5'- cCCGUCggCCgaggCCGGGGaacugGCCGUAccgCCGGc -3'
miRNA:   3'- -GGCGG--GGa---GGCCCCa----UGGCAUa--GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.