miRNA display CGI


Results 21 - 40 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14060 3' -60.5 NC_003521.1 + 202418 0.71 0.627455
Target:  5'- aCCGCCCgUUCGGGGaACgGacggCCGGc -3'
miRNA:   3'- -GGCGGGgAGGCCCCaUGgCaua-GGCC- -5'
14060 3' -60.5 NC_003521.1 + 39753 0.7 0.664994
Target:  5'- uUCGCCCCUCCGucucuguuccaGGGgcUCGUaGUCCaGGu -3'
miRNA:   3'- -GGCGGGGAGGC-----------CCCauGGCA-UAGG-CC- -5'
14060 3' -60.5 NC_003521.1 + 179489 0.7 0.674339
Target:  5'- aCGCUCCggcagcgCCGGGGaACaCGUGUCCc- -3'
miRNA:   3'- gGCGGGGa------GGCCCCaUG-GCAUAGGcc -5'
14060 3' -60.5 NC_003521.1 + 157272 0.69 0.702172
Target:  5'- gUCGCCUUUCCGGGGcaacggcgGCCGcGUaCGGg -3'
miRNA:   3'- -GGCGGGGAGGCCCCa-------UGGCaUAgGCC- -5'
14060 3' -60.5 NC_003521.1 + 106388 0.69 0.724125
Target:  5'- gCCGCCuCCUCCGucgucGGGUGgCGUgaagagguucugaaaGUCCGu -3'
miRNA:   3'- -GGCGG-GGAGGC-----CCCAUgGCA---------------UAGGCc -5'
14060 3' -60.5 NC_003521.1 + 17742 0.69 0.729558
Target:  5'- cCCGUCggCCgaggCCGGGGaacugGCCGUAccgCCGGc -3'
miRNA:   3'- -GGCGG--GGa---GGCCCCa----UGGCAUa--GGCC- -5'
14060 3' -60.5 NC_003521.1 + 152355 0.68 0.756304
Target:  5'- aCGCUgCUCUGGGG--CCGg--CCGGg -3'
miRNA:   3'- gGCGGgGAGGCCCCauGGCauaGGCC- -5'
14060 3' -60.5 NC_003521.1 + 117614 0.67 0.807113
Target:  5'- gCCGCCCCcgUCCuacccGGcGCCGUAUgCGGc -3'
miRNA:   3'- -GGCGGGG--AGGcc---CCaUGGCAUAgGCC- -5'
14060 3' -60.5 NC_003521.1 + 146829 0.68 0.790639
Target:  5'- uCCGCCUgUCUGGGGggcGCCucGUCCu- -3'
miRNA:   3'- -GGCGGGgAGGCCCCa--UGGcaUAGGcc -5'
14060 3' -60.5 NC_003521.1 + 92249 0.68 0.790639
Target:  5'- cCCGUcgaCCCUCCcuGGGUGCCGcugCCGc -3'
miRNA:   3'- -GGCG---GGGAGGc-CCCAUGGCauaGGCc -5'
14060 3' -60.5 NC_003521.1 + 92210 0.68 0.782219
Target:  5'- cCCGCCCCUgCUcGGGUcCCGggGUCCc- -3'
miRNA:   3'- -GGCGGGGA-GGcCCCAuGGCa-UAGGcc -5'
14060 3' -60.5 NC_003521.1 + 160314 0.68 0.782219
Target:  5'- gCCGCCUCcCCGGGGUcAUCGU-UgUGGu -3'
miRNA:   3'- -GGCGGGGaGGCCCCA-UGGCAuAgGCC- -5'
14060 3' -60.5 NC_003521.1 + 92470 0.68 0.773685
Target:  5'- uUGCCCgCUCgGGGGUcucccaGCCuc-UCCGGg -3'
miRNA:   3'- gGCGGG-GAGgCCCCA------UGGcauAGGCC- -5'
14060 3' -60.5 NC_003521.1 + 47564 0.71 0.627455
Target:  5'- cCCGCUCCgcagCCG----ACCGUAUCCGGg -3'
miRNA:   3'- -GGCGGGGa---GGCcccaUGGCAUAGGCC- -5'
14060 3' -60.5 NC_003521.1 + 2190 0.71 0.627455
Target:  5'- aCCGCCCgUUCGGGGaACgGacggCCGGc -3'
miRNA:   3'- -GGCGGGgAGGCCCCaUGgCaua-GGCC- -5'
14060 3' -60.5 NC_003521.1 + 148920 0.72 0.580638
Target:  5'- gCCGUCCUggaUCCGGGGguCCGUccGUCCGu -3'
miRNA:   3'- -GGCGGGG---AGGCCCCauGGCA--UAGGCc -5'
14060 3' -60.5 NC_003521.1 + 123335 0.72 0.571347
Target:  5'- aCGCCCCgCCGGacaGgcCCGUcgCCGGg -3'
miRNA:   3'- gGCGGGGaGGCCc--CauGGCAuaGGCC- -5'
14060 3' -60.5 NC_003521.1 + 43941 0.72 0.562092
Target:  5'- uCCGCCCCggccucacCCGcGGUGCCGUugCUGGa -3'
miRNA:   3'- -GGCGGGGa-------GGCcCCAUGGCAuaGGCC- -5'
14060 3' -60.5 NC_003521.1 + 234471 0.73 0.525527
Target:  5'- aCCgGCCCCUCUGGGau-CCGgAUCUGGc -3'
miRNA:   3'- -GG-CGGGGAGGCCCcauGGCaUAGGCC- -5'
14060 3' -60.5 NC_003521.1 + 52153 0.66 0.873932
Target:  5'- cCCGCCCgUCagcgacGGUACCGcggGUCCGc -3'
miRNA:   3'- -GGCGGGgAGgcc---CCAUGGCa--UAGGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.