Results 1 - 20 of 40 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14064 | 5' | -52.7 | NC_003521.1 | + | 5842 | 0.66 | 0.98958 |
Target: 5'- cGACcGGGGcccuUUUauGCGAUCCGGGCg -3' miRNA: 3'- -CUGuCCCCuu--AAAacCGUUGGGCCUG- -5' |
|||||||
14064 | 5' | -52.7 | NC_003521.1 | + | 7993 | 0.69 | 0.950469 |
Target: 5'- cGGCGGGGGAGguaccggGGCAGCgCCGu-- -3' miRNA: 3'- -CUGUCCCCUUaaaa---CCGUUG-GGCcug -5' |
|||||||
14064 | 5' | -52.7 | NC_003521.1 | + | 18046 | 0.67 | 0.981137 |
Target: 5'- cGugGGGGGAAUggUGG-GACgaGGACc -3' miRNA: 3'- -CugUCCCCUUAaaACCgUUGggCCUG- -5' |
|||||||
14064 | 5' | -52.7 | NC_003521.1 | + | 27510 | 0.69 | 0.954501 |
Target: 5'- cACGGGGGGcgU---GCGGCCCGaGGCg -3' miRNA: 3'- cUGUCCCCUuaAaacCGUUGGGC-CUG- -5' |
|||||||
14064 | 5' | -52.7 | NC_003521.1 | + | 32719 | 0.67 | 0.984975 |
Target: 5'- aGGguGGGGggU--UGGCGACgCCaccagcGGGCg -3' miRNA: 3'- -CUguCCCCuuAaaACCGUUG-GG------CCUG- -5' |
|||||||
14064 | 5' | -52.7 | NC_003521.1 | + | 37206 | 0.66 | 0.993915 |
Target: 5'- -cCGGGGGAccgcggUUaGGCGGCCuCGGGg -3' miRNA: 3'- cuGUCCCCUua----AAaCCGUUGG-GCCUg -5' |
|||||||
14064 | 5' | -52.7 | NC_003521.1 | + | 40896 | 0.73 | 0.816021 |
Target: 5'- gGGCGGGGGucAGUUUaauagcgaggcgggGGCGGCCCGGGg -3' miRNA: 3'- -CUGUCCCC--UUAAAa-------------CCGUUGGGCCUg -5' |
|||||||
14064 | 5' | -52.7 | NC_003521.1 | + | 46030 | 0.66 | 0.98958 |
Target: 5'- cGugGGGaGGAGUgaggGGCGccaugacguugGCaCCGGGCg -3' miRNA: 3'- -CugUCC-CCUUAaaa-CCGU-----------UG-GGCCUG- -5' |
|||||||
14064 | 5' | -52.7 | NC_003521.1 | + | 46040 | 0.66 | 0.98958 |
Target: 5'- aGugAGGGGcgccAUgacgUUGGCA--CCGGGCg -3' miRNA: 3'- -CugUCCCCu---UAa---AACCGUugGGCCUG- -5' |
|||||||
14064 | 5' | -52.7 | NC_003521.1 | + | 60696 | 0.69 | 0.950469 |
Target: 5'- cGCGGGGGAcccgggGGCGGCgCGGGu -3' miRNA: 3'- cUGUCCCCUuaaaa-CCGUUGgGCCUg -5' |
|||||||
14064 | 5' | -52.7 | NC_003521.1 | + | 64841 | 0.67 | 0.983139 |
Target: 5'- aACAGGGGAucuccacGGCGAUCuCGGGu -3' miRNA: 3'- cUGUCCCCUuaaaa--CCGUUGG-GCCUg -5' |
|||||||
14064 | 5' | -52.7 | NC_003521.1 | + | 66279 | 0.66 | 0.98958 |
Target: 5'- aGCAGGaGGGAggcggacUGGCGggcacagccgACCCGGAg -3' miRNA: 3'- cUGUCC-CCUUaaa----ACCGU----------UGGGCCUg -5' |
|||||||
14064 | 5' | -52.7 | NC_003521.1 | + | 71280 | 0.66 | 0.991977 |
Target: 5'- aGGCGGGGGccgc--GGCAcggGCCCcugGGGCa -3' miRNA: 3'- -CUGUCCCCuuaaaaCCGU---UGGG---CCUG- -5' |
|||||||
14064 | 5' | -52.7 | NC_003521.1 | + | 73139 | 0.66 | 0.99347 |
Target: 5'- cGGCGGGGGcagcggcggcGGCGccgccucggccugcgACCUGGACg -3' miRNA: 3'- -CUGUCCCCuuaaaa----CCGU---------------UGGGCCUG- -5' |
|||||||
14064 | 5' | -52.7 | NC_003521.1 | + | 84794 | 0.66 | 0.99374 |
Target: 5'- aGCAGaGGGAGggcacgucgGGCAGCUcgauaCGGGCa -3' miRNA: 3'- cUGUC-CCCUUaaaa-----CCGUUGG-----GCCUG- -5' |
|||||||
14064 | 5' | -52.7 | NC_003521.1 | + | 91362 | 0.71 | 0.883658 |
Target: 5'- gGACgguGGGGGAGgg--GGCcgaaccccgGGCCCGGACc -3' miRNA: 3'- -CUG---UCCCCUUaaaaCCG---------UUGGGCCUG- -5' |
|||||||
14064 | 5' | -52.7 | NC_003521.1 | + | 98236 | 0.69 | 0.950469 |
Target: 5'- aGGC-GGGGAGgcgggGGCGGCCacggCGGGCa -3' miRNA: 3'- -CUGuCCCCUUaaaa-CCGUUGG----GCCUG- -5' |
|||||||
14064 | 5' | -52.7 | NC_003521.1 | + | 101012 | 0.67 | 0.983139 |
Target: 5'- gGACAGGGGcgcGUccUGGCGggcacGCCCGuGCa -3' miRNA: 3'- -CUGUCCCCu--UAaaACCGU-----UGGGCcUG- -5' |
|||||||
14064 | 5' | -52.7 | NC_003521.1 | + | 103605 | 0.68 | 0.974329 |
Target: 5'- cGCGGGGGAucugaaagaagGGCGuCCCGGcCg -3' miRNA: 3'- cUGUCCCCUuaaaa------CCGUuGGGCCuG- -5' |
|||||||
14064 | 5' | -52.7 | NC_003521.1 | + | 103882 | 0.72 | 0.876575 |
Target: 5'- cGACAGGGGGAUg--GGCuGCCgcgCGGuCa -3' miRNA: 3'- -CUGUCCCCUUAaaaCCGuUGG---GCCuG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home