Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14064 | 5' | -52.7 | NC_003521.1 | + | 40896 | 0.73 | 0.816021 |
Target: 5'- gGGCGGGGGucAGUUUaauagcgaggcgggGGCGGCCCGGGg -3' miRNA: 3'- -CUGUCCCC--UUAAAa-------------CCGUUGGGCCUg -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 46040 | 0.66 | 0.98958 |
Target: 5'- aGugAGGGGcgccAUgacgUUGGCA--CCGGGCg -3' miRNA: 3'- -CugUCCCCu---UAa---AACCGUugGGCCUG- -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 66279 | 0.66 | 0.98958 |
Target: 5'- aGCAGGaGGGAggcggacUGGCGggcacagccgACCCGGAg -3' miRNA: 3'- cUGUCC-CCUUaaa----ACCGU----------UGGGCCUg -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 188688 | 0.66 | 0.98958 |
Target: 5'- gGGCGGGGGAuacgcgGGU--CCCGuGGCg -3' miRNA: 3'- -CUGUCCCCUuaaaa-CCGuuGGGC-CUG- -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 5842 | 0.66 | 0.98958 |
Target: 5'- cGACcGGGGcccuUUUauGCGAUCCGGGCg -3' miRNA: 3'- -CUGuCCCCuu--AAAacCGUUGGGCCUG- -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 71280 | 0.66 | 0.991977 |
Target: 5'- aGGCGGGGGccgc--GGCAcggGCCCcugGGGCa -3' miRNA: 3'- -CUGUCCCCuuaaaaCCGU---UGGG---CCUG- -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 73139 | 0.66 | 0.99347 |
Target: 5'- cGGCGGGGGcagcggcggcGGCGccgccucggccugcgACCUGGACg -3' miRNA: 3'- -CUGUCCCCuuaaaa----CCGU---------------UGGGCCUG- -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 137276 | 0.66 | 0.993915 |
Target: 5'- aGCGGGGGcccca--GCGACCUGGAg -3' miRNA: 3'- cUGUCCCCuuaaaacCGUUGGGCCUg -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 46030 | 0.66 | 0.98958 |
Target: 5'- cGugGGGaGGAGUgaggGGCGccaugacguugGCaCCGGGCg -3' miRNA: 3'- -CugUCC-CCUUAaaa-CCGU-----------UG-GGCCUG- -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 122013 | 0.67 | 0.986656 |
Target: 5'- uGGCAGGGGGu------CGACUCGGGCg -3' miRNA: 3'- -CUGUCCCCUuaaaaccGUUGGGCCUG- -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 198319 | 0.67 | 0.984975 |
Target: 5'- gGGguGGGGGAUg--GGCGgcuaaACCUGuGACg -3' miRNA: 3'- -CUguCCCCUUAaaaCCGU-----UGGGC-CUG- -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 32719 | 0.67 | 0.984975 |
Target: 5'- aGGguGGGGggU--UGGCGACgCCaccagcGGGCg -3' miRNA: 3'- -CUguCCCCuuAaaACCGUUG-GG------CCUG- -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 103882 | 0.72 | 0.876575 |
Target: 5'- cGACAGGGGGAUg--GGCuGCCgcgCGGuCa -3' miRNA: 3'- -CUGUCCCCUUAaaaCCGuUGG---GCCuG- -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 91362 | 0.71 | 0.883658 |
Target: 5'- gGACgguGGGGGAGgg--GGCcgaaccccgGGCCCGGACc -3' miRNA: 3'- -CUG---UCCCCUUaaaaCCG---------UUGGGCCUG- -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 164037 | 0.7 | 0.921338 |
Target: 5'- aGCuGGGGAAUUggUGGUGGCCuCGGcCa -3' miRNA: 3'- cUGuCCCCUUAAa-ACCGUUGG-GCCuG- -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 120741 | 0.7 | 0.941709 |
Target: 5'- -cCAGGGGcaccaggUGGCcGCCUGGAUg -3' miRNA: 3'- cuGUCCCCuuaaa--ACCGuUGGGCCUG- -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 60696 | 0.69 | 0.950469 |
Target: 5'- cGCGGGGGAcccgggGGCGGCgCGGGu -3' miRNA: 3'- cUGUCCCCUuaaaa-CCGUUGgGCCUg -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 27510 | 0.69 | 0.954501 |
Target: 5'- cACGGGGGGcgU---GCGGCCCGaGGCg -3' miRNA: 3'- cUGUCCCCUuaAaacCGUUGGGC-CUG- -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 18046 | 0.67 | 0.981137 |
Target: 5'- cGugGGGGGAAUggUGG-GACgaGGACc -3' miRNA: 3'- -CugUCCCCUUAaaACCgUUGggCCUG- -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 101012 | 0.67 | 0.983139 |
Target: 5'- gGACAGGGGcgcGUccUGGCGggcacGCCCGuGCa -3' miRNA: 3'- -CUGUCCCCu--UAaaACCGU-----UGGGCcUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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