miRNA display CGI


Results 21 - 40 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14066 3' -54.5 NC_003521.1 + 29414 0.66 0.98374
Target:  5'- uUCAcGAUguGCGCCgGCUgcugcacGaGAGCCGGCg -3'
miRNA:   3'- gAGU-CUG--UGCGG-CGAaa-----C-CUUGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 31054 0.68 0.93542
Target:  5'- --aGGAcCACGCUGUUguuauggUGaGAACCGGCc -3'
miRNA:   3'- gagUCU-GUGCGGCGAa------AC-CUUGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 32813 0.69 0.930497
Target:  5'- -cCAGAUACGCCG----GGAGcguCCGGCg -3'
miRNA:   3'- gaGUCUGUGCGGCgaaaCCUU---GGCCG- -5'
14066 3' -54.5 NC_003521.1 + 35089 0.66 0.975145
Target:  5'- gCUC-GACAUGCCGgaUUcGAGgCGGCc -3'
miRNA:   3'- -GAGuCUGUGCGGCgaAAcCUUgGCCG- -5'
14066 3' -54.5 NC_003521.1 + 36808 0.71 0.859314
Target:  5'- uUCGGGCAgGCCGUgaucacgcgccacGGGCCGGCg -3'
miRNA:   3'- gAGUCUGUgCGGCGaaac---------CUUGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 36895 0.73 0.750598
Target:  5'- gUCAGGCA-GCCGUggUGGAAgaGGCu -3'
miRNA:   3'- gAGUCUGUgCGGCGaaACCUUggCCG- -5'
14066 3' -54.5 NC_003521.1 + 40329 0.7 0.876034
Target:  5'- gCUCGGuGCGCGCCGCcagUUUGGccaggaucaCGGCg -3'
miRNA:   3'- -GAGUC-UGUGCGGCG---AAACCuug------GCCG- -5'
14066 3' -54.5 NC_003521.1 + 40527 0.67 0.966806
Target:  5'- -cCGGcccgccGCACGCCGCcgcGGAaACCGGUu -3'
miRNA:   3'- gaGUC------UGUGCGGCGaaaCCU-UGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 43561 0.67 0.969779
Target:  5'- -aCAGAgGCgGCCGCUgacugggGGGACgGGg -3'
miRNA:   3'- gaGUCUgUG-CGGCGAaa-----CCUUGgCCg -5'
14066 3' -54.5 NC_003521.1 + 44232 0.67 0.966806
Target:  5'- gCUCAaGCucugcCGCCGUgcgcgGGAGuCCGGCg -3'
miRNA:   3'- -GAGUcUGu----GCGGCGaaa--CCUU-GGCCG- -5'
14066 3' -54.5 NC_003521.1 + 44634 0.66 0.981842
Target:  5'- -gCAGAUgauGCGCCuGUgggugUUGGAgaagugcaACCGGCu -3'
miRNA:   3'- gaGUCUG---UGCGG-CGa----AACCU--------UGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 44828 0.7 0.882964
Target:  5'- ---cGACACGCCacaGCUccUGGGGCUGGUg -3'
miRNA:   3'- gaguCUGUGCGG---CGAa-ACCUUGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 45286 0.73 0.769216
Target:  5'- --uGGACcggGCGCCGCUgggccaGGAGCCGGa -3'
miRNA:   3'- gagUCUG---UGCGGCGAaa----CCUUGGCCg -5'
14066 3' -54.5 NC_003521.1 + 45631 0.66 0.977084
Target:  5'- -gCAGACGgccacCGCCGCcggcuccgcgGGGuCCGGCg -3'
miRNA:   3'- gaGUCUGU-----GCGGCGaaa-------CCUuGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 46168 0.68 0.944586
Target:  5'- uCUCGGGCuCGUCGUccUGGAAgCGGa -3'
miRNA:   3'- -GAGUCUGuGCGGCGaaACCUUgGCCg -5'
14066 3' -54.5 NC_003521.1 + 47996 0.69 0.925345
Target:  5'- -aCGGACGCGCCGCcg-GGcuucugCGGCu -3'
miRNA:   3'- gaGUCUGUGCGGCGaaaCCuug---GCCG- -5'
14066 3' -54.5 NC_003521.1 + 48353 0.72 0.813576
Target:  5'- aUCAgccGAC-CGCCGUccUGGAAaCCGGCg -3'
miRNA:   3'- gAGU---CUGuGCGGCGaaACCUU-GGCCG- -5'
14066 3' -54.5 NC_003521.1 + 49797 0.66 0.98374
Target:  5'- -gCAGACGCuGCCGCccgaauggcUGGGcGCCGuGCa -3'
miRNA:   3'- gaGUCUGUG-CGGCGaa-------ACCU-UGGC-CG- -5'
14066 3' -54.5 NC_003521.1 + 50292 0.73 0.759962
Target:  5'- -aCGGACAUGCCGUuaggUUUcGGGCCGGUa -3'
miRNA:   3'- gaGUCUGUGCGGCG----AAAcCUUGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 52124 0.7 0.895543
Target:  5'- -cCAGAUACGCCGUggUGGGagggugcaucguaGCgGGUa -3'
miRNA:   3'- gaGUCUGUGCGGCGaaACCU-------------UGgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.