miRNA display CGI


Results 1 - 20 of 222 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14066 3' -54.5 NC_003521.1 + 108 0.67 0.963632
Target:  5'- uUCGGGCcggcggguCGUCGCg--GGGACUGGUu -3'
miRNA:   3'- gAGUCUGu-------GCGGCGaaaCCUUGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 205 0.67 0.966806
Target:  5'- -cCGGcccgccGCACGCCGCcgcGGAaACCGGUu -3'
miRNA:   3'- gaGUC------UGUGCGGCGaaaCCU-UGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 1138 0.67 0.960252
Target:  5'- --gGGACACGaaCCGCUgccguccccgGGAGCCacGGCg -3'
miRNA:   3'- gagUCUGUGC--GGCGAaa--------CCUUGG--CCG- -5'
14066 3' -54.5 NC_003521.1 + 1776 0.72 0.792713
Target:  5'- cCUCGGAacacgGCGCCGCgaccagguccgGGGGuCCGGCg -3'
miRNA:   3'- -GAGUCUg----UGCGGCGaaa--------CCUU-GGCCG- -5'
14066 3' -54.5 NC_003521.1 + 1945 0.66 0.98374
Target:  5'- --aGGACGCGgaaacggacCCGCg--GGAcacccaGCCGGCg -3'
miRNA:   3'- gagUCUGUGC---------GGCGaaaCCU------UGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 4349 0.7 0.902465
Target:  5'- uCUCGGACGgaccgguuCGCCGCUUgc-GGCCGaGCa -3'
miRNA:   3'- -GAGUCUGU--------GCGGCGAAaccUUGGC-CG- -5'
14066 3' -54.5 NC_003521.1 + 5393 0.66 0.976848
Target:  5'- -gCAGACGgGuuGCUcgGGGGCCucgcccgaggacgaGGCg -3'
miRNA:   3'- gaGUCUGUgCggCGAaaCCUUGG--------------CCG- -5'
14066 3' -54.5 NC_003521.1 + 5674 0.7 0.889682
Target:  5'- gUCgAGACACGggcgcccguCCGCgg-GGAACgGGCg -3'
miRNA:   3'- gAG-UCUGUGC---------GGCGaaaCCUUGgCCG- -5'
14066 3' -54.5 NC_003521.1 + 7230 0.67 0.960252
Target:  5'- --gAGAUcaugGCGCCGUUcUGaAGCCGGCa -3'
miRNA:   3'- gagUCUG----UGCGGCGAaACcUUGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 9633 0.66 0.975145
Target:  5'- -aCAGACcuAUGCCuCUUUGG-GCCGGa -3'
miRNA:   3'- gaGUCUG--UGCGGcGAAACCuUGGCCg -5'
14066 3' -54.5 NC_003521.1 + 13200 0.81 0.335476
Target:  5'- gCUCGGGC-CGCCGUgUUGGAgggccgACCGGCg -3'
miRNA:   3'- -GAGUCUGuGCGGCGaAACCU------UGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 13872 0.71 0.83837
Target:  5'- -gCGGGCgGCGCCGCcaUGGAuuucGCCGGg -3'
miRNA:   3'- gaGUCUG-UGCGGCGaaACCU----UGGCCg -5'
14066 3' -54.5 NC_003521.1 + 14719 0.68 0.93542
Target:  5'- cCUguG-CACGCCGUgguaucugUUGGGcgugacggGCCGGCc -3'
miRNA:   3'- -GAguCuGUGCGGCGa-------AACCU--------UGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 17002 0.69 0.908524
Target:  5'- -gCAGGCGC-CCGCggUGGcGgCGGCg -3'
miRNA:   3'- gaGUCUGUGcGGCGaaACCuUgGCCG- -5'
14066 3' -54.5 NC_003521.1 + 17797 0.66 0.977551
Target:  5'- gUCGGcguGCugGCCGUgc---GACCGGCg -3'
miRNA:   3'- gAGUC---UGugCGGCGaaaccUUGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 18922 0.68 0.93542
Target:  5'- --gGGugGCGCCGCgc----GCCGGCa -3'
miRNA:   3'- gagUCugUGCGGCGaaaccuUGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 21350 0.68 0.956661
Target:  5'- gCUCAG-CGCGCUGCUaUGGucgcucguGCCGcaGCu -3'
miRNA:   3'- -GAGUCuGUGCGGCGAaACCu-------UGGC--CG- -5'
14066 3' -54.5 NC_003521.1 + 25568 0.66 0.985485
Target:  5'- -gCAGGCG-GCCGCg--GGGACaGGUg -3'
miRNA:   3'- gaGUCUGUgCGGCGaaaCCUUGgCCG- -5'
14066 3' -54.5 NC_003521.1 + 27033 0.66 0.985485
Target:  5'- -cCAGGCGCGgCGCa--GGGGCCGa- -3'
miRNA:   3'- gaGUCUGUGCgGCGaaaCCUUGGCcg -5'
14066 3' -54.5 NC_003521.1 + 28024 0.72 0.787368
Target:  5'- cCUCcaGCACGCCGCgg-GGAGCgGGa -3'
miRNA:   3'- -GAGucUGUGCGGCGaaaCCUUGgCCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.