miRNA display CGI


Results 1 - 20 of 222 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14066 3' -54.5 NC_003521.1 + 146760 1.11 0.004725
Target:  5'- aCUCAGACACGCCGCUUUGGAACCGGCc -3'
miRNA:   3'- -GAGUCUGUGCGGCGAAACCUUGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 152340 0.81 0.335476
Target:  5'- uUCGGGCccgcgccgACGCUGCUcUGGGGCCGGCc -3'
miRNA:   3'- gAGUCUG--------UGCGGCGAaACCUUGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 13200 0.81 0.335476
Target:  5'- gCUCGGGC-CGCCGUgUUGGAgggccgACCGGCg -3'
miRNA:   3'- -GAGUCUGuGCGGCGaAACCU------UGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 57442 0.8 0.381884
Target:  5'- gCUCcuGCACGCCGCaaaagcGGAACCGGCc -3'
miRNA:   3'- -GAGucUGUGCGGCGaaa---CCUUGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 198086 0.75 0.649915
Target:  5'- cCUCGG-CGCGCacggugcccuuguaCGCUUUGGAaaucguGCCGGCc -3'
miRNA:   3'- -GAGUCuGUGCG--------------GCGAAACCU------UGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 127820 0.75 0.652911
Target:  5'- -cCAGGCGCGCaGCUcgUGGAAgggccCCGGCg -3'
miRNA:   3'- gaGUCUGUGCGgCGAa-ACCUU-----GGCCG- -5'
14066 3' -54.5 NC_003521.1 + 223673 0.74 0.692633
Target:  5'- cCUCGGccuCGCGCCGCUgcUGGAACCa-- -3'
miRNA:   3'- -GAGUCu--GUGCGGCGAa-ACCUUGGccg -5'
14066 3' -54.5 NC_003521.1 + 98993 0.74 0.692633
Target:  5'- -gUAGGCGCGUCGCa--GGAACUGGUg -3'
miRNA:   3'- gaGUCUGUGCGGCGaaaCCUUGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 172543 0.74 0.712238
Target:  5'- gUCAGGCGggggaucucgUGCCGCUgucccGGggUCGGCg -3'
miRNA:   3'- gAGUCUGU----------GCGGCGAaa---CCuuGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 125772 0.74 0.712238
Target:  5'- -aCAG-CACGUCGCUcaGGcAGCCGGCc -3'
miRNA:   3'- gaGUCuGUGCGGCGAaaCC-UUGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 200876 0.73 0.741136
Target:  5'- cCUCcGAUACGCUGC--UGGAgcuGCUGGCg -3'
miRNA:   3'- -GAGuCUGUGCGGCGaaACCU---UGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 36895 0.73 0.750598
Target:  5'- gUCAGGCA-GCCGUggUGGAAgaGGCu -3'
miRNA:   3'- gAGUCUGUgCGGCGaaACCUUggCCG- -5'
14066 3' -54.5 NC_003521.1 + 50292 0.73 0.759962
Target:  5'- -aCGGACAUGCCGUuaggUUUcGGGCCGGUa -3'
miRNA:   3'- gaGUCUGUGCGGCG----AAAcCUUGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 45286 0.73 0.769216
Target:  5'- --uGGACcggGCGCCGCUgggccaGGAGCCGGa -3'
miRNA:   3'- gagUCUG---UGCGGCGAaa----CCUUGGCCg -5'
14066 3' -54.5 NC_003521.1 + 55954 0.73 0.778355
Target:  5'- cCUCuGugGaCGCUGCUgugccUGGggUCGGCa -3'
miRNA:   3'- -GAGuCugU-GCGGCGAa----ACCuuGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 139917 0.73 0.778355
Target:  5'- --gAGGCGCGCUGCUccucGGGGCaCGGCc -3'
miRNA:   3'- gagUCUGUGCGGCGAaa--CCUUG-GCCG- -5'
14066 3' -54.5 NC_003521.1 + 167763 0.72 0.787368
Target:  5'- aUCGucGugGCGCUGgugUUGGAACCGGUg -3'
miRNA:   3'- gAGU--CugUGCGGCga-AACCUUGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 28024 0.72 0.787368
Target:  5'- cCUCcaGCACGCCGCgg-GGAGCgGGa -3'
miRNA:   3'- -GAGucUGUGCGGCGaaaCCUUGgCCg -5'
14066 3' -54.5 NC_003521.1 + 202003 0.72 0.792713
Target:  5'- cCUCGGAacacgGCGCCGCgaccagguccgGGGGuCCGGCg -3'
miRNA:   3'- -GAGUCUg----UGCGGCGaaa--------CCUU-GGCCG- -5'
14066 3' -54.5 NC_003521.1 + 1776 0.72 0.792713
Target:  5'- cCUCGGAacacgGCGCCGCgaccagguccgGGGGuCCGGCg -3'
miRNA:   3'- -GAGUCUg----UGCGGCGaaa--------CCUU-GGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.