miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14066 3' -54.5 NC_003521.1 + 40329 0.7 0.876034
Target:  5'- gCUCGGuGCGCGCCGCcagUUUGGccaggaucaCGGCg -3'
miRNA:   3'- -GAGUC-UGUGCGGCG---AAACCuug------GCCG- -5'
14066 3' -54.5 NC_003521.1 + 55173 0.72 0.804987
Target:  5'- cCUCGGGCGCGgaCGCUgaaacacGACCGGCg -3'
miRNA:   3'- -GAGUCUGUGCg-GCGAaacc---UUGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 77615 0.72 0.822008
Target:  5'- -cCGGGCGCGcCCGUgacGGcGCCGGCc -3'
miRNA:   3'- gaGUCUGUGC-GGCGaaaCCuUGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 116879 0.71 0.830275
Target:  5'- -gCAGugGCGCgGCUgcGGcggcgcGCCGGCg -3'
miRNA:   3'- gaGUCugUGCGgCGAaaCCu-----UGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 150670 0.71 0.830275
Target:  5'- uCUCcGGCggcgGCGCCGCUgcugcUGGGugcugcugcGCCGGCg -3'
miRNA:   3'- -GAGuCUG----UGCGGCGAa----ACCU---------UGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 117060 0.71 0.83837
Target:  5'- --gAGGCG-GCCGC---GGAGCCGGCg -3'
miRNA:   3'- gagUCUGUgCGGCGaaaCCUUGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 36808 0.71 0.859314
Target:  5'- uUCGGGCAgGCCGUgaucacgcgccacGGGCCGGCg -3'
miRNA:   3'- gAGUCUGUgCGGCGaaac---------CUUGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 102438 0.71 0.861555
Target:  5'- -cCAGACGCGCCGCa--GGccgCGGCa -3'
miRNA:   3'- gaGUCUGUGCGGCGaaaCCuugGCCG- -5'
14066 3' -54.5 NC_003521.1 + 152535 0.7 0.876034
Target:  5'- gCUCAGccccaGCACGCUGCUcaGGua-CGGCa -3'
miRNA:   3'- -GAGUC-----UGUGCGGCGAaaCCuugGCCG- -5'
14066 3' -54.5 NC_003521.1 + 75248 0.72 0.804987
Target:  5'- uUCAuGCACGCCGa---GGAggGCCGGCu -3'
miRNA:   3'- gAGUcUGUGCGGCgaaaCCU--UGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 225070 0.72 0.804987
Target:  5'- gCUCGGGCAUGCUGCUgcccGGGcgcACCuGCa -3'
miRNA:   3'- -GAGUCUGUGCGGCGAaa--CCU---UGGcCG- -5'
14066 3' -54.5 NC_003521.1 + 202003 0.72 0.792713
Target:  5'- cCUCGGAacacgGCGCCGCgaccagguccgGGGGuCCGGCg -3'
miRNA:   3'- -GAGUCUg----UGCGGCGaaa--------CCUU-GGCCG- -5'
14066 3' -54.5 NC_003521.1 + 57442 0.8 0.381884
Target:  5'- gCUCcuGCACGCCGCaaaagcGGAACCGGCc -3'
miRNA:   3'- -GAGucUGUGCGGCGaaa---CCUUGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 127820 0.75 0.652911
Target:  5'- -cCAGGCGCGCaGCUcgUGGAAgggccCCGGCg -3'
miRNA:   3'- gaGUCUGUGCGgCGAa-ACCUU-----GGCCG- -5'
14066 3' -54.5 NC_003521.1 + 223673 0.74 0.692633
Target:  5'- cCUCGGccuCGCGCCGCUgcUGGAACCa-- -3'
miRNA:   3'- -GAGUCu--GUGCGGCGAa-ACCUUGGccg -5'
14066 3' -54.5 NC_003521.1 + 125772 0.74 0.712238
Target:  5'- -aCAG-CACGUCGCUcaGGcAGCCGGCc -3'
miRNA:   3'- gaGUCuGUGCGGCGAaaCC-UUGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 45286 0.73 0.769216
Target:  5'- --uGGACcggGCGCCGCUgggccaGGAGCCGGa -3'
miRNA:   3'- gagUCUG---UGCGGCGAaa----CCUUGGCCg -5'
14066 3' -54.5 NC_003521.1 + 139917 0.73 0.778355
Target:  5'- --gAGGCGCGCUGCUccucGGGGCaCGGCc -3'
miRNA:   3'- gagUCUGUGCGGCGAaa--CCUUG-GCCG- -5'
14066 3' -54.5 NC_003521.1 + 28024 0.72 0.787368
Target:  5'- cCUCcaGCACGCCGCgg-GGAGCgGGa -3'
miRNA:   3'- -GAGucUGUGCGGCGaaaCCUUGgCCg -5'
14066 3' -54.5 NC_003521.1 + 167763 0.72 0.787368
Target:  5'- aUCGucGugGCGCUGgugUUGGAACCGGUg -3'
miRNA:   3'- gAGU--CugUGCGGCga-AACCUUGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.