miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14066 3' -54.5 NC_003521.1 + 101713 0.66 0.977319
Target:  5'- gCUCAgcacGAUGCGCgGCgg-GGGcgagauggggaagGCCGGCa -3'
miRNA:   3'- -GAGU----CUGUGCGgCGaaaCCU-------------UGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 225843 0.66 0.98374
Target:  5'- -cCAcGGCGCGCuCGUggUGGuGCgGGCa -3'
miRNA:   3'- gaGU-CUGUGCG-GCGaaACCuUGgCCG- -5'
14066 3' -54.5 NC_003521.1 + 44634 0.66 0.981842
Target:  5'- -gCAGAUgauGCGCCuGUgggugUUGGAgaagugcaACCGGCu -3'
miRNA:   3'- gaGUCUG---UGCGG-CGa----AACCU--------UGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 100575 0.66 0.975145
Target:  5'- gUCcGACuuacCGCCGUa--GGGGCCGGUg -3'
miRNA:   3'- gAGuCUGu---GCGGCGaaaCCUUGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 167691 0.66 0.981842
Target:  5'- -gCGGugACGaCGCUcgUGGAGgaGGCg -3'
miRNA:   3'- gaGUCugUGCgGCGAa-ACCUUggCCG- -5'
14066 3' -54.5 NC_003521.1 + 149178 0.66 0.979781
Target:  5'- uCUCGGcGCGCGUCGCc-----ACCGGCg -3'
miRNA:   3'- -GAGUC-UGUGCGGCGaaaccuUGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 45631 0.66 0.977084
Target:  5'- -gCAGACGgccacCGCCGCcggcuccgcgGGGuCCGGCg -3'
miRNA:   3'- gaGUCUGU-----GCGGCGaaa-------CCUuGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 64386 0.66 0.98374
Target:  5'- -gCGGGCGCGuCUGCagaacgUGGAGCgCGGg -3'
miRNA:   3'- gaGUCUGUGC-GGCGaa----ACCUUG-GCCg -5'
14066 3' -54.5 NC_003521.1 + 109492 0.66 0.981842
Target:  5'- -cCAGGCGCuCCaGCgagUGGucgcGCCGGCc -3'
miRNA:   3'- gaGUCUGUGcGG-CGaa-ACCu---UGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 234602 0.66 0.977551
Target:  5'- gCUguGGUGCGaCUGCg--GGAACUGGCa -3'
miRNA:   3'- -GAguCUGUGC-GGCGaaaCCUUGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 101177 0.66 0.98374
Target:  5'- cCUCAGACgGCGuCCGCgc-----CCGGCg -3'
miRNA:   3'- -GAGUCUG-UGC-GGCGaaaccuuGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 92262 0.66 0.981842
Target:  5'- cCUgGGugcCGCuGCCGCUaccggccGGAGCCGGUc -3'
miRNA:   3'- -GAgUCu--GUG-CGGCGAaa-----CCUUGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 236883 0.66 0.977551
Target:  5'- uUCGGAUACGCCGUUUUacucGCCGucGCu -3'
miRNA:   3'- gAGUCUGUGCGGCGAAAccu-UGGC--CG- -5'
14066 3' -54.5 NC_003521.1 + 151775 0.66 0.97913
Target:  5'- gCUguGGCGCGCCuGCa--GGuacagcaugaagguGGCCGGCa -3'
miRNA:   3'- -GAguCUGUGCGG-CGaaaCC--------------UUGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 225777 0.66 0.979781
Target:  5'- gCUCGcgcuCGCGCCGCUcgucagGGuGCCaGGCg -3'
miRNA:   3'- -GAGUcu--GUGCGGCGAaa----CCuUGG-CCG- -5'
14066 3' -54.5 NC_003521.1 + 155998 0.66 0.98374
Target:  5'- --aGGAgGCGCUGCgc--GAGCUGGCc -3'
miRNA:   3'- gagUCUgUGCGGCGaaacCUUGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 117652 0.66 0.985485
Target:  5'- ---cGACuGCGCCGCgagacGGugcGCCGGCc -3'
miRNA:   3'- gaguCUG-UGCGGCGaaa--CCu--UGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 186518 0.66 0.979566
Target:  5'- uCUCGGGCGguguCGCCaGCgggggcuccgUGGGaggcaggGCCGGCa -3'
miRNA:   3'- -GAGUCUGU----GCGG-CGaa--------ACCU-------UGGCCG- -5'
14066 3' -54.5 NC_003521.1 + 117719 0.66 0.981842
Target:  5'- ---cGAUGCGCCGUcgacgUGGGAgCGGUa -3'
miRNA:   3'- gaguCUGUGCGGCGaa---ACCUUgGCCG- -5'
14066 3' -54.5 NC_003521.1 + 35089 0.66 0.975145
Target:  5'- gCUC-GACAUGCCGgaUUcGAGgCGGCc -3'
miRNA:   3'- -GAGuCUGUGCGGCgaAAcCUUgGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.