Results 41 - 60 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14066 | 5' | -63.2 | NC_003521.1 | + | 101841 | 0.69 | 0.519837 |
Target: 5'- uGGCGGGCUCCGG---GUUGUGgaugGCGg -3' miRNA: 3'- uCCGCCCGGGGCCgcuCGAUACa---CGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 178800 | 0.69 | 0.510763 |
Target: 5'- cGGGCGaGGCaugCCCGGCGGGCgg-GU-CGa -3' miRNA: 3'- -UCCGC-CCG---GGGCCGCUCGauaCAcGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 240117 | 0.69 | 0.510763 |
Target: 5'- gGGGUGGGCgugcggucguCCCGGCGGGCgcgGaaaGCGc -3' miRNA: 3'- -UCCGCCCG----------GGGCCGCUCGauaCa--CGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 187252 | 0.69 | 0.492816 |
Target: 5'- gAGGC-GGCCCCGGgaGAGCUAgagagacGCGa -3' miRNA: 3'- -UCCGcCCGGGGCCg-CUCGAUaca----CGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 198584 | 0.7 | 0.483952 |
Target: 5'- cGGCGGGCUagaCGcCGAGCUGagguugugGUGCGa -3' miRNA: 3'- uCCGCCCGGg--GCcGCUCGAUa-------CACGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 155332 | 0.7 | 0.483952 |
Target: 5'- -cGCGGGUCCCGGCGGGg---GcGCGg -3' miRNA: 3'- ucCGCCCGGGGCCGCUCgauaCaCGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 39890 | 0.7 | 0.483952 |
Target: 5'- gGGGUGGGCgugcggucguCCCGGCGGGCgcgaaaGCGc -3' miRNA: 3'- -UCCGCCCG----------GGGCCGCUCGauaca-CGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 67574 | 0.7 | 0.475165 |
Target: 5'- cGGCGGGCCCCG-CGGGCcagaGUcGCc -3' miRNA: 3'- uCCGCCCGGGGCcGCUCGaua-CA-CGc -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 223388 | 0.7 | 0.466459 |
Target: 5'- -cGCGGcGCCCCGacGCGGGCcGUGUGgCGc -3' miRNA: 3'- ucCGCC-CGGGGC--CGCUCGaUACAC-GC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 101017 | 0.7 | 0.466459 |
Target: 5'- gGGGCGcGUCCUGGCGGGCacgcccGUGCa -3' miRNA: 3'- -UCCGCcCGGGGCCGCUCGaua---CACGc -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 213960 | 0.7 | 0.466459 |
Target: 5'- cGGGUGGGCgCCGGCucGGGCc--GUGCu -3' miRNA: 3'- -UCCGCCCGgGGCCG--CUCGauaCACGc -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 86697 | 0.7 | 0.45441 |
Target: 5'- uGGCGGGCCgCGGCG-GCgacgacgagGCGg -3' miRNA: 3'- uCCGCCCGGgGCCGCuCGauaca----CGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 36690 | 0.7 | 0.449298 |
Target: 5'- gAGGcCGGGCUCCGGCGccuggcccgAGCagGUGgagGCGc -3' miRNA: 3'- -UCC-GCCCGGGGCCGC---------UCGa-UACa--CGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 87091 | 0.7 | 0.449298 |
Target: 5'- uGGUGGGCCaCGGUGGGCaucGUGCc -3' miRNA: 3'- uCCGCCCGGgGCCGCUCGauaCACGc -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 112452 | 0.7 | 0.449298 |
Target: 5'- cAGGC-GGCCCUGGUGGGCgcgcccgGCGg -3' miRNA: 3'- -UCCGcCCGGGGCCGCUCGauaca--CGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 101184 | 0.7 | 0.444218 |
Target: 5'- cGGCGuccGCgCCCGGCGGGCggaucuugaccgagAUGUGCa -3' miRNA: 3'- uCCGCc--CG-GGGCCGCUCGa-------------UACACGc -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 122520 | 0.7 | 0.440849 |
Target: 5'- cGGCGGGCaggCCGGCG-GCggugGUaGUGCu -3' miRNA: 3'- uCCGCCCGg--GGCCGCuCGa---UA-CACGc -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 59613 | 0.7 | 0.43917 |
Target: 5'- uGGCGgcGGCCCCGGCGgcgaccgcGGCUcgcaggcguugGUGCGg -3' miRNA: 3'- uCCGC--CCGGGGCCGC--------UCGAua---------CACGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 163642 | 0.71 | 0.407985 |
Target: 5'- cGuGCGGGCCUCGGUGcGCgucucgGUGcUGCGg -3' miRNA: 3'- uC-CGCCCGGGGCCGCuCGa-----UAC-ACGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 98259 | 0.71 | 0.400011 |
Target: 5'- cGGCGGGCa-CGGCGAGCc-UG-GCGg -3' miRNA: 3'- uCCGCCCGggGCCGCUCGauACaCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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