Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14068 | 5' | -56 | NC_003521.1 | + | 123480 | 0.66 | 0.968543 |
Target: 5'- aGCuCCGuGUCCGUCG-CcgGCGggGUg -3' miRNA: 3'- gCG-GGCuUAGGCAGCaGuaCGCgaCA- -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 129794 | 0.66 | 0.955245 |
Target: 5'- gCGCgCCGAggCCGaccgCGUCAaguugGUGCUGg -3' miRNA: 3'- -GCG-GGCUuaGGCa---GCAGUa----CGCGACa -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 137954 | 0.74 | 0.600302 |
Target: 5'- aGCCCGAGcgcgugugguaugCCGaCGUgGUGCGCUGUg -3' miRNA: 3'- gCGGGCUUa------------GGCaGCAgUACGCGACA- -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 142465 | 1.07 | 0.007128 |
Target: 5'- uCGCCCGAAUCCGUCGUCAUGCGCUGUc -3' miRNA: 3'- -GCGGGCUUAGGCAGCAGUACGCGACA- -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 150416 | 0.69 | 0.867458 |
Target: 5'- aGCCCGGAcCCGUCuGUCGcGUGCa-- -3' miRNA: 3'- gCGGGCUUaGGCAG-CAGUaCGCGaca -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 163540 | 0.68 | 0.906935 |
Target: 5'- cCGCCCucuucuaccUCCGUC-UgAUGCGCUGUg -3' miRNA: 3'- -GCGGGcuu------AGGCAGcAgUACGCGACA- -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 164075 | 0.72 | 0.712288 |
Target: 5'- uCGCCuCGGAggUCGUCGUCAUGC-CUGc -3' miRNA: 3'- -GCGG-GCUUa-GGCAGCAGUACGcGACa -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 164891 | 0.68 | 0.906935 |
Target: 5'- gGCCgaGGAUCCGaCGUaCGUGCGCg-- -3' miRNA: 3'- gCGGg-CUUAGGCaGCA-GUACGCGaca -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 197002 | 0.66 | 0.965521 |
Target: 5'- uCGCCaguGAAgCCGUCGUCA-GUGCa-- -3' miRNA: 3'- -GCGGg--CUUaGGCAGCAGUaCGCGaca -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 201636 | 0.69 | 0.881453 |
Target: 5'- -cCCCGA--CCGUCGUCGUcGCGCg-- -3' miRNA: 3'- gcGGGCUuaGGCAGCAGUA-CGCGaca -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 204016 | 0.69 | 0.881453 |
Target: 5'- uGCCCGAGUCCGcCGUCcgcgaGCgGCUc- -3' miRNA: 3'- gCGGGCUUAGGCaGCAGua---CG-CGAca -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 205035 | 0.71 | 0.777683 |
Target: 5'- aCGCCCGAuggAUCCGuuUCGUCcgucUGCGCa-- -3' miRNA: 3'- -GCGGGCU---UAGGC--AGCAGu---ACGCGaca -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 205734 | 0.68 | 0.906935 |
Target: 5'- cCGCCuCGAAUCCGgcaUGUCGaGCGCc-- -3' miRNA: 3'- -GCGG-GCUUAGGCa--GCAGUaCGCGaca -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 208170 | 0.67 | 0.933858 |
Target: 5'- uGCUCGAcuuuccgCCGUCGUC-UGCGCc-- -3' miRNA: 3'- gCGGGCUua-----GGCAGCAGuACGCGaca -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 211791 | 0.69 | 0.887483 |
Target: 5'- aGCCCGGaaccguGUCCGUCGUCGuuuuuuuUGCGg--- -3' miRNA: 3'- gCGGGCU------UAGGCAGCAGU-------ACGCgaca -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 221086 | 0.66 | 0.968543 |
Target: 5'- aGCCCGAcgCCGUCaccgccacgcugGUCAgcaGCGUguagGUc -3' miRNA: 3'- gCGGGCUuaGGCAG------------CAGUa--CGCGa---CA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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