Results 1 - 20 of 36 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14068 | 5' | -56 | NC_003521.1 | + | 5227 | 0.68 | 0.894622 |
Target: 5'- cCGCCCGAGUCCGccucUCGUCcuccCGCa-- -3' miRNA: 3'- -GCGGGCUUAGGC----AGCAGuac-GCGaca -5' |
|||||||
14068 | 5' | -56 | NC_003521.1 | + | 5879 | 0.67 | 0.933858 |
Target: 5'- gGCUgGAG-CCGUCGUCGUccuCGCUGc -3' miRNA: 3'- gCGGgCUUaGGCAGCAGUAc--GCGACa -5' |
|||||||
14068 | 5' | -56 | NC_003521.1 | + | 22649 | 0.73 | 0.683141 |
Target: 5'- aCGCCUGggU-CGUCGUCAccuacuaccUGCuGCUGUa -3' miRNA: 3'- -GCGGGCuuAgGCAGCAGU---------ACG-CGACA- -5' |
|||||||
14068 | 5' | -56 | NC_003521.1 | + | 24206 | 0.66 | 0.965521 |
Target: 5'- gCGCCCGccuaCCGUCGaC-UGCuGCUGUc -3' miRNA: 3'- -GCGGGCuua-GGCAGCaGuACG-CGACA- -5' |
|||||||
14068 | 5' | -56 | NC_003521.1 | + | 26744 | 0.66 | 0.958876 |
Target: 5'- aCGCCCGuga-UGUgGUCGgcGCGCUGg -3' miRNA: 3'- -GCGGGCuuagGCAgCAGUa-CGCGACa -5' |
|||||||
14068 | 5' | -56 | NC_003521.1 | + | 30154 | 0.69 | 0.867458 |
Target: 5'- uGCCUGuGUCUGggCGUCAcGCGUUGUc -3' miRNA: 3'- gCGGGCuUAGGCa-GCAGUaCGCGACA- -5' |
|||||||
14068 | 5' | -56 | NC_003521.1 | + | 42447 | 0.66 | 0.965521 |
Target: 5'- cCGCCCGccacaaCGcCGUCcgGCGCUa- -3' miRNA: 3'- -GCGGGCuuag--GCaGCAGuaCGCGAca -5' |
|||||||
14068 | 5' | -56 | NC_003521.1 | + | 44147 | 0.67 | 0.933858 |
Target: 5'- -cUCCGAcgCCGUCGUCGaGCagcaGCUGg -3' miRNA: 3'- gcGGGCUuaGGCAGCAGUaCG----CGACa -5' |
|||||||
14068 | 5' | -56 | NC_003521.1 | + | 47303 | 0.76 | 0.507621 |
Target: 5'- cCGUCCG-AUCCGUCGUCucaGCcGCUGUg -3' miRNA: 3'- -GCGGGCuUAGGCAGCAGua-CG-CGACA- -5' |
|||||||
14068 | 5' | -56 | NC_003521.1 | + | 53486 | 0.68 | 0.900887 |
Target: 5'- aGCCCGAaaaGUCC-UCGcgagCcgGUGCGCUGUu -3' miRNA: 3'- gCGGGCU---UAGGcAGCa---G--UACGCGACA- -5' |
|||||||
14068 | 5' | -56 | NC_003521.1 | + | 54119 | 0.72 | 0.721888 |
Target: 5'- aGaCCGGAgCCGUCGUCGUGCauGCUGc -3' miRNA: 3'- gCgGGCUUaGGCAGCAGUACG--CGACa -5' |
|||||||
14068 | 5' | -56 | NC_003521.1 | + | 72438 | 0.68 | 0.923756 |
Target: 5'- aGUCCucg-CCGUCGUCGUcGCGaCUGUc -3' miRNA: 3'- gCGGGcuuaGGCAGCAGUA-CGC-GACA- -5' |
|||||||
14068 | 5' | -56 | NC_003521.1 | + | 77706 | 0.71 | 0.759483 |
Target: 5'- uGCCCGAGgaggcggCgGUgGUCGUGgCGCUGg -3' miRNA: 3'- gCGGGCUUa------GgCAgCAGUAC-GCGACa -5' |
|||||||
14068 | 5' | -56 | NC_003521.1 | + | 89457 | 0.67 | 0.928919 |
Target: 5'- uGCUCGuuguugUCGUCGUCAcGCGUUGa -3' miRNA: 3'- gCGGGCuua---GGCAGCAGUaCGCGACa -5' |
|||||||
14068 | 5' | -56 | NC_003521.1 | + | 90046 | 0.68 | 0.894622 |
Target: 5'- gCGCCCGc--CCGUCGUCGcgcgaGCGCa-- -3' miRNA: 3'- -GCGGGCuuaGGCAGCAGUa----CGCGaca -5' |
|||||||
14068 | 5' | -56 | NC_003521.1 | + | 92208 | 0.67 | 0.947345 |
Target: 5'- cCGCCCGg--CCGcgCGaCGaGCGCUGUg -3' miRNA: 3'- -GCGGGCuuaGGCa-GCaGUaCGCGACA- -5' |
|||||||
14068 | 5' | -56 | NC_003521.1 | + | 102313 | 0.72 | 0.740862 |
Target: 5'- gCGUCCGcggcaUCGUCGUCGUGCGCgUGg -3' miRNA: 3'- -GCGGGCuua--GGCAGCAGUACGCG-ACa -5' |
|||||||
14068 | 5' | -56 | NC_003521.1 | + | 106389 | 0.66 | 0.9623 |
Target: 5'- cCGCCUcc-UCCGUCGUCGggugGCGUg-- -3' miRNA: 3'- -GCGGGcuuAGGCAGCAGUa---CGCGaca -5' |
|||||||
14068 | 5' | -56 | NC_003521.1 | + | 117546 | 0.66 | 0.951402 |
Target: 5'- gGaCCUGAcgCUGUCGUCGcucaCGCUGUa -3' miRNA: 3'- gC-GGGCUuaGGCAGCAGUac--GCGACA- -5' |
|||||||
14068 | 5' | -56 | NC_003521.1 | + | 120818 | 0.66 | 0.967656 |
Target: 5'- uGUCCGAGUCC-UCGUCgguauccuccucggGUGCcauGCUGg -3' miRNA: 3'- gCGGGCUUAGGcAGCAG--------------UACG---CGACa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home