miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14068 5' -56 NC_003521.1 + 137954 0.74 0.600302
Target:  5'- aGCCCGAGcgcgugugguaugCCGaCGUgGUGCGCUGUg -3'
miRNA:   3'- gCGGGCUUa------------GGCaGCAgUACGCGACA- -5'
14068 5' -56 NC_003521.1 + 221086 0.66 0.968543
Target:  5'- aGCCCGAcgCCGUCaccgccacgcugGUCAgcaGCGUguagGUc -3'
miRNA:   3'- gCGGGCUuaGGCAG------------CAGUa--CGCGa---CA- -5'
14068 5' -56 NC_003521.1 + 123480 0.66 0.968543
Target:  5'- aGCuCCGuGUCCGUCG-CcgGCGggGUg -3'
miRNA:   3'- gCG-GGCuUAGGCAGCaGuaCGCgaCA- -5'
14068 5' -56 NC_003521.1 + 120818 0.66 0.967656
Target:  5'- uGUCCGAGUCC-UCGUCgguauccuccucggGUGCcauGCUGg -3'
miRNA:   3'- gCGGGCUUAGGcAGCAG--------------UACG---CGACa -5'
14068 5' -56 NC_003521.1 + 197002 0.66 0.965521
Target:  5'- uCGCCaguGAAgCCGUCGUCA-GUGCa-- -3'
miRNA:   3'- -GCGGg--CUUaGGCAGCAGUaCGCGaca -5'
14068 5' -56 NC_003521.1 + 42447 0.66 0.965521
Target:  5'- cCGCCCGccacaaCGcCGUCcgGCGCUa- -3'
miRNA:   3'- -GCGGGCuuag--GCaGCAGuaCGCGAca -5'
14068 5' -56 NC_003521.1 + 106389 0.66 0.9623
Target:  5'- cCGCCUcc-UCCGUCGUCGggugGCGUg-- -3'
miRNA:   3'- -GCGGGcuuAGGCAGCAGUa---CGCGaca -5'
14068 5' -56 NC_003521.1 + 129794 0.66 0.955245
Target:  5'- gCGCgCCGAggCCGaccgCGUCAaguugGUGCUGg -3'
miRNA:   3'- -GCG-GGCUuaGGCa---GCAGUa----CGCGACa -5'
14068 5' -56 NC_003521.1 + 72438 0.68 0.923756
Target:  5'- aGUCCucg-CCGUCGUCGUcGCGaCUGUc -3'
miRNA:   3'- gCGGGcuuaGGCAGCAGUA-CGC-GACA- -5'
14068 5' -56 NC_003521.1 + 163540 0.68 0.906935
Target:  5'- cCGCCCucuucuaccUCCGUC-UgAUGCGCUGUg -3'
miRNA:   3'- -GCGGGcuu------AGGCAGcAgUACGCGACA- -5'
14068 5' -56 NC_003521.1 + 90046 0.68 0.894622
Target:  5'- gCGCCCGc--CCGUCGUCGcgcgaGCGCa-- -3'
miRNA:   3'- -GCGGGCuuaGGCAGCAGUa----CGCGaca -5'
14068 5' -56 NC_003521.1 + 164075 0.72 0.712288
Target:  5'- uCGCCuCGGAggUCGUCGUCAUGC-CUGc -3'
miRNA:   3'- -GCGG-GCUUa-GGCAGCAGUACGcGACa -5'
14068 5' -56 NC_003521.1 + 54119 0.72 0.721888
Target:  5'- aGaCCGGAgCCGUCGUCGUGCauGCUGc -3'
miRNA:   3'- gCgGGCUUaGGCAGCAGUACG--CGACa -5'
14068 5' -56 NC_003521.1 + 102313 0.72 0.740862
Target:  5'- gCGUCCGcggcaUCGUCGUCGUGCGCgUGg -3'
miRNA:   3'- -GCGGGCuua--GGCAGCAGUACGCG-ACa -5'
14068 5' -56 NC_003521.1 + 150416 0.69 0.867458
Target:  5'- aGCCCGGAcCCGUCuGUCGcGUGCa-- -3'
miRNA:   3'- gCGGGCUUaGGCAG-CAGUaCGCGaca -5'
14068 5' -56 NC_003521.1 + 30154 0.69 0.867458
Target:  5'- uGCCUGuGUCUGggCGUCAcGCGUUGUc -3'
miRNA:   3'- gCGGGCuUAGGCa-GCAGUaCGCGACA- -5'
14068 5' -56 NC_003521.1 + 204016 0.69 0.881453
Target:  5'- uGCCCGAGUCCGcCGUCcgcgaGCgGCUc- -3'
miRNA:   3'- gCGGGCUUAGGCaGCAGua---CG-CGAca -5'
14068 5' -56 NC_003521.1 + 211791 0.69 0.887483
Target:  5'- aGCCCGGaaccguGUCCGUCGUCGuuuuuuuUGCGg--- -3'
miRNA:   3'- gCGGGCU------UAGGCAGCAGU-------ACGCgaca -5'
14068 5' -56 NC_003521.1 + 24206 0.66 0.965521
Target:  5'- gCGCCCGccuaCCGUCGaC-UGCuGCUGUc -3'
miRNA:   3'- -GCGGGCuua-GGCAGCaGuACG-CGACA- -5'
14068 5' -56 NC_003521.1 + 47303 0.76 0.507621
Target:  5'- cCGUCCG-AUCCGUCGUCucaGCcGCUGUg -3'
miRNA:   3'- -GCGGGCuUAGGCAGCAGua-CG-CGACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.