Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14070 | 3' | -45.2 | NC_003521.1 | + | 142053 | 1.07 | 0.057943 |
Target: 5'- gACUACCACCGCGUCAAAUAAUAGUAAu -3' miRNA: 3'- -UGAUGGUGGCGCAGUUUAUUAUCAUU- -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 128882 | 0.76 | 0.976696 |
Target: 5'- cCUGCCGCCGCGcCAGGUAGUcgagggcggcgucGGUAc -3' miRNA: 3'- uGAUGGUGGCGCaGUUUAUUA-------------UCAUu -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 129803 | 0.72 | 0.998664 |
Target: 5'- --gGCCgACCGCGUCAAGU--UGGUGc -3' miRNA: 3'- ugaUGG-UGGCGCAGUUUAuuAUCAUu -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 140802 | 0.72 | 0.998905 |
Target: 5'- aGCcGCUGCUGCGUCGucUGGUGGUGGa -3' miRNA: 3'- -UGaUGGUGGCGCAGUuuAUUAUCAUU- -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 74028 | 0.71 | 0.999278 |
Target: 5'- uCUACCGCCGCGUCAc---------- -3' miRNA: 3'- uGAUGGUGGCGCAGUuuauuaucauu -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 116378 | 0.71 | 0.999535 |
Target: 5'- uGCUGCUGCCGCG-CGAcGUGGUGGa-- -3' miRNA: 3'- -UGAUGGUGGCGCaGUU-UAUUAUCauu -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 225899 | 0.7 | 0.999823 |
Target: 5'- cGCUGCCGCuCGCGcUCGAAgcgccGGUGAc -3' miRNA: 3'- -UGAUGGUG-GCGC-AGUUUauua-UCAUU- -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 187481 | 0.68 | 0.999976 |
Target: 5'- --cGCCGCCGCGcCGGcGUGGUGGUc- -3' miRNA: 3'- ugaUGGUGGCGCaGUU-UAUUAUCAuu -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 234784 | 0.68 | 0.999976 |
Target: 5'- cGCUACCGCC-CGagAGcgAGUGGUAc -3' miRNA: 3'- -UGAUGGUGGcGCagUUuaUUAUCAUu -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 61863 | 0.68 | 0.999976 |
Target: 5'- --cACCGCCGCGUCuu---GUGGUc- -3' miRNA: 3'- ugaUGGUGGCGCAGuuuauUAUCAuu -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 45155 | 0.68 | 0.999987 |
Target: 5'- uACUgggACCGCaCGCG-UAAGUGGUGGUGc -3' miRNA: 3'- -UGA---UGGUG-GCGCaGUUUAUUAUCAUu -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 140330 | 0.68 | 0.999987 |
Target: 5'- gGCgucCCACCGCGUCGAugcugacGUGGUu- -3' miRNA: 3'- -UGau-GGUGGCGCAGUUuau----UAUCAuu -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 53910 | 0.68 | 0.99999 |
Target: 5'- --cGCCACCGgcgccccccuuggaCGUCAGGUAGcUGGUGAu -3' miRNA: 3'- ugaUGGUGGC--------------GCAGUUUAUU-AUCAUU- -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 166046 | 0.68 | 0.999991 |
Target: 5'- cGCUGCCGCCGuCGUCAu---------- -3' miRNA: 3'- -UGAUGGUGGC-GCAGUuuauuaucauu -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 197607 | 0.68 | 0.999991 |
Target: 5'- cGCUGCCcgguaaCGCGUgAcAGUAAUAGUAGg -3' miRNA: 3'- -UGAUGGug----GCGCAgU-UUAUUAUCAUU- -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 119509 | 0.67 | 0.999994 |
Target: 5'- --cGCCauGCCGgGUCAGGUGcgGGUAc -3' miRNA: 3'- ugaUGG--UGGCgCAGUUUAUuaUCAUu -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 129859 | 0.67 | 0.999994 |
Target: 5'- cCUGCUACUGCGaCGAGUG--GGUGAc -3' miRNA: 3'- uGAUGGUGGCGCaGUUUAUuaUCAUU- -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 37101 | 0.67 | 0.999994 |
Target: 5'- uACUGCCACCGCGugUCGGAc-------- -3' miRNA: 3'- -UGAUGGUGGCGC--AGUUUauuaucauu -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 103895 | 0.67 | 0.999994 |
Target: 5'- gGCUGCCGCgCG-GUCAGGUAAcGGg-- -3' miRNA: 3'- -UGAUGGUG-GCgCAGUUUAUUaUCauu -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 74619 | 0.67 | 0.999994 |
Target: 5'- --cGCCGCCGCGcCAAcagcggGGUGGUGc -3' miRNA: 3'- ugaUGGUGGCGCaGUUua----UUAUCAUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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