Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14070 | 3' | -45.2 | NC_003521.1 | + | 53032 | 0.66 | 0.999999 |
Target: 5'- --cGCCGCCGCuGUCGAA--GUGGg-- -3' miRNA: 3'- ugaUGGUGGCG-CAGUUUauUAUCauu -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 103895 | 0.67 | 0.999994 |
Target: 5'- gGCUGCCGCgCG-GUCAGGUAAcGGg-- -3' miRNA: 3'- -UGAUGGUG-GCgCAGUUUAUUaUCauu -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 146416 | 0.67 | 0.999996 |
Target: 5'- --gGCCGCCGCGUCAAc--------- -3' miRNA: 3'- ugaUGGUGGCGCAGUUuauuaucauu -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 100653 | 0.67 | 0.999997 |
Target: 5'- ---cCCGCCGCGUUGcgucggcugcggauGGUGAUAGUGGu -3' miRNA: 3'- ugauGGUGGCGCAGU--------------UUAUUAUCAUU- -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 184917 | 0.67 | 0.999999 |
Target: 5'- gUUGCCGCCGCcGUCGGAg---GGUc- -3' miRNA: 3'- uGAUGGUGGCG-CAGUUUauuaUCAuu -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 54144 | 0.66 | 0.999999 |
Target: 5'- uGCUACCGCCgGCGUUGGAg---AGg-- -3' miRNA: 3'- -UGAUGGUGG-CGCAGUUUauuaUCauu -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 36248 | 0.66 | 0.999999 |
Target: 5'- gACUGCCGgCGCG-CGAcGUGGUGGa-- -3' miRNA: 3'- -UGAUGGUgGCGCaGUU-UAUUAUCauu -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 117268 | 0.66 | 0.999999 |
Target: 5'- cGCcACCGCCGuCGUCGGcc-GUGGUGc -3' miRNA: 3'- -UGaUGGUGGC-GCAGUUuauUAUCAUu -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 126585 | 0.66 | 0.999999 |
Target: 5'- --aGCCGCCGuCGUgCcGGUGGUAGUGc -3' miRNA: 3'- ugaUGGUGGC-GCA-GuUUAUUAUCAUu -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 119509 | 0.67 | 0.999994 |
Target: 5'- --cGCCauGCCGgGUCAGGUGcgGGUAc -3' miRNA: 3'- ugaUGG--UGGCgCAGUUUAUuaUCAUu -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 74619 | 0.67 | 0.999994 |
Target: 5'- --cGCCGCCGCGcCAAcagcggGGUGGUGc -3' miRNA: 3'- ugaUGGUGGCGCaGUUua----UUAUCAUu -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 37101 | 0.67 | 0.999994 |
Target: 5'- uACUGCCACCGCGugUCGGAc-------- -3' miRNA: 3'- -UGAUGGUGGCGC--AGUUUauuaucauu -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 74028 | 0.71 | 0.999278 |
Target: 5'- uCUACCGCCGCGUCAc---------- -3' miRNA: 3'- uGAUGGUGGCGCAGUuuauuaucauu -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 116378 | 0.71 | 0.999535 |
Target: 5'- uGCUGCUGCCGCG-CGAcGUGGUGGa-- -3' miRNA: 3'- -UGAUGGUGGCGCaGUU-UAUUAUCauu -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 225899 | 0.7 | 0.999823 |
Target: 5'- cGCUGCCGCuCGCGcUCGAAgcgccGGUGAc -3' miRNA: 3'- -UGAUGGUG-GCGC-AGUUUauua-UCAUU- -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 187481 | 0.68 | 0.999976 |
Target: 5'- --cGCCGCCGCGcCGGcGUGGUGGUc- -3' miRNA: 3'- ugaUGGUGGCGCaGUU-UAUUAUCAuu -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 140330 | 0.68 | 0.999987 |
Target: 5'- gGCgucCCACCGCGUCGAugcugacGUGGUu- -3' miRNA: 3'- -UGau-GGUGGCGCAGUUuau----UAUCAuu -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 53910 | 0.68 | 0.99999 |
Target: 5'- --cGCCACCGgcgccccccuuggaCGUCAGGUAGcUGGUGAu -3' miRNA: 3'- ugaUGGUGGC--------------GCAGUUUAUU-AUCAUU- -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 197607 | 0.68 | 0.999991 |
Target: 5'- cGCUGCCcgguaaCGCGUgAcAGUAAUAGUAGg -3' miRNA: 3'- -UGAUGGug----GCGCAgU-UUAUUAUCAUU- -5' |
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14070 | 3' | -45.2 | NC_003521.1 | + | 129859 | 0.67 | 0.999994 |
Target: 5'- cCUGCUACUGCGaCGAGUG--GGUGAc -3' miRNA: 3'- uGAUGGUGGCGCaGUUUAUuaUCAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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