miRNA display CGI


Results 61 - 80 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14070 5' -62 NC_003521.1 + 202753 0.67 0.66793
Target:  5'- aGCGACGGCCaccacaACCCCUGUacaGGCGcGUAa -3'
miRNA:   3'- aUGCUGCUGG------UGGGGGCG---CCGUcCAU- -5'
14070 5' -62 NC_003521.1 + 156883 0.67 0.66793
Target:  5'- -cCGGCGGCCGCUgCCCGaUGGCAcGGg- -3'
miRNA:   3'- auGCUGCUGGUGG-GGGC-GCCGU-CCau -5'
14070 5' -62 NC_003521.1 + 199365 0.67 0.664098
Target:  5'- -uCGugGGCCACCaccgugguguagaCgGCGGCGGGg- -3'
miRNA:   3'- auGCugCUGGUGGg------------GgCGCCGUCCau -5'
14070 5' -62 NC_003521.1 + 143122 0.67 0.658344
Target:  5'- gACGAguCGGCCACCaCCGaCGGCgAGGg- -3'
miRNA:   3'- aUGCU--GCUGGUGGgGGC-GCCG-UCCau -5'
14070 5' -62 NC_003521.1 + 169555 0.67 0.657384
Target:  5'- cGCGGCccCCGCCUCCGCcgauguuGGCGGGa- -3'
miRNA:   3'- aUGCUGcuGGUGGGGGCG-------CCGUCCau -5'
14070 5' -62 NC_003521.1 + 141269 0.68 0.648739
Target:  5'- cGCGguuACGAguuccCCGCCUCCGCGaCAGGUGc -3'
miRNA:   3'- aUGC---UGCU-----GGUGGGGGCGCcGUCCAU- -5'
14070 5' -62 NC_003521.1 + 208610 0.68 0.648739
Target:  5'- uUGCGGCGGCCauaGCCagucaCCGCGGUgAGGc- -3'
miRNA:   3'- -AUGCUGCUGG---UGGg----GGCGCCG-UCCau -5'
14070 5' -62 NC_003521.1 + 112813 0.68 0.648739
Target:  5'- cUGgGACGGCCgcgACCCCCcggauuccGUGGCGGGc- -3'
miRNA:   3'- -AUgCUGCUGG---UGGGGG--------CGCCGUCCau -5'
14070 5' -62 NC_003521.1 + 190289 0.68 0.648739
Target:  5'- cUGCGAUacuGCCGCgaaCCCCGCGGCccauuGGUAc -3'
miRNA:   3'- -AUGCUGc--UGGUG---GGGGCGCCGu----CCAU- -5'
14070 5' -62 NC_003521.1 + 17824 0.68 0.648739
Target:  5'- gACGACGACC-CCCaCCGCcauaccaaguggGcGCAGGa- -3'
miRNA:   3'- aUGCUGCUGGuGGG-GGCG------------C-CGUCCau -5'
14070 5' -62 NC_003521.1 + 167444 0.68 0.639122
Target:  5'- -cCGugGACCACcaCCCCGUGGuCAGa-- -3'
miRNA:   3'- auGCugCUGGUG--GGGGCGCC-GUCcau -5'
14070 5' -62 NC_003521.1 + 148636 0.68 0.629501
Target:  5'- gGCGGCGAaaaaCGgCCCCGagcuCGGCGGGg- -3'
miRNA:   3'- aUGCUGCUg---GUgGGGGC----GCCGUCCau -5'
14070 5' -62 NC_003521.1 + 167841 0.68 0.629501
Target:  5'- ---aGCGGCCAggcCCCCCGCGGCcgcuucuucaugAGGUc -3'
miRNA:   3'- augcUGCUGGU---GGGGGCGCCG------------UCCAu -5'
14070 5' -62 NC_003521.1 + 92170 0.68 0.619881
Target:  5'- -uUGGCGGCCAUCCCCGcCGaGCucGGGg- -3'
miRNA:   3'- auGCUGCUGGUGGGGGC-GC-CG--UCCau -5'
14070 5' -62 NC_003521.1 + 128127 0.68 0.619881
Target:  5'- gGCGuuGACCACCCCCa--GCAGGa- -3'
miRNA:   3'- aUGCugCUGGUGGGGGcgcCGUCCau -5'
14070 5' -62 NC_003521.1 + 59612 0.68 0.619881
Target:  5'- -gUGGCGGCgGCCCCgGCGGCGa--- -3'
miRNA:   3'- auGCUGCUGgUGGGGgCGCCGUccau -5'
14070 5' -62 NC_003521.1 + 77725 0.68 0.619881
Target:  5'- gGCGACGGCgGCCUCgguggGCGGCGucuGGUAg -3'
miRNA:   3'- aUGCUGCUGgUGGGGg----CGCCGU---CCAU- -5'
14070 5' -62 NC_003521.1 + 67491 0.68 0.619881
Target:  5'- cGCcuuCGACCGCaCCCUGUGGCcccAGGUGu -3'
miRNA:   3'- aUGcu-GCUGGUG-GGGGCGCCG---UCCAU- -5'
14070 5' -62 NC_003521.1 + 115650 0.68 0.61027
Target:  5'- gUGCGuguCGG-CGCCCCaGUGGCGGGUGa -3'
miRNA:   3'- -AUGCu--GCUgGUGGGGgCGCCGUCCAU- -5'
14070 5' -62 NC_003521.1 + 44676 0.68 0.61027
Target:  5'- cUGCGACGACCuguACUUCUGCuacacGCAGGUAc -3'
miRNA:   3'- -AUGCUGCUGG---UGGGGGCGc----CGUCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.