miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14070 5' -62 NC_003521.1 + 111171 0.67 0.705946
Target:  5'- aGCG-CGGCCGCCCCgGCgacGGCGccgcggacGGUGg -3'
miRNA:   3'- aUGCuGCUGGUGGGGgCG---CCGU--------CCAU- -5'
14070 5' -62 NC_003521.1 + 111930 0.7 0.513135
Target:  5'- -cCGACG-CCGCCCUCgacuaccuggcgcgGCGGCAGGa- -3'
miRNA:   3'- auGCUGCuGGUGGGGG--------------CGCCGUCCau -5'
14070 5' -62 NC_003521.1 + 112053 0.67 0.696506
Target:  5'- cUGCGACG-CCugCUggaggacgCCGCGGUGGGg- -3'
miRNA:   3'- -AUGCUGCuGGugGG--------GGCGCCGUCCau -5'
14070 5' -62 NC_003521.1 + 112813 0.68 0.648739
Target:  5'- cUGgGACGGCCgcgACCCCCcggauuccGUGGCGGGc- -3'
miRNA:   3'- -AUgCUGCUGG---UGGGGG--------CGCCGUCCau -5'
14070 5' -62 NC_003521.1 + 113552 0.67 0.700288
Target:  5'- cGgGACGACCACCagcgcgaggaggaCGCGGUGGGg- -3'
miRNA:   3'- aUgCUGCUGGUGGgg-----------GCGCCGUCCau -5'
14070 5' -62 NC_003521.1 + 113782 0.7 0.521411
Target:  5'- gACGGCGACgGCCagcgcgacgggcaCCGCGGCGGcGUc -3'
miRNA:   3'- aUGCUGCUGgUGGg------------GGCGCCGUC-CAu -5'
14070 5' -62 NC_003521.1 + 113861 0.67 0.693665
Target:  5'- gGCGACGACgGCgcgggUUCCGCGGCggcacagcgacagcAGGUAg -3'
miRNA:   3'- aUGCUGCUGgUG-----GGGGCGCCG--------------UCCAU- -5'
14070 5' -62 NC_003521.1 + 115650 0.68 0.61027
Target:  5'- gUGCGuguCGG-CGCCCCaGUGGCGGGUGa -3'
miRNA:   3'- -AUGCu--GCUgGUGGGGgCGCCGUCCAU- -5'
14070 5' -62 NC_003521.1 + 116772 0.76 0.224949
Target:  5'- aGCGugGGCCGCCgCCGCGGCAcgcuGGc- -3'
miRNA:   3'- aUGCugCUGGUGGgGGCGCCGU----CCau -5'
14070 5' -62 NC_003521.1 + 117217 0.74 0.321076
Target:  5'- cUACGGCGGCUGCCCCUGCGacGCAaGGg- -3'
miRNA:   3'- -AUGCUGCUGGUGGGGGCGC--CGU-CCau -5'
14070 5' -62 NC_003521.1 + 117331 0.72 0.411408
Target:  5'- gGCGACGACgACaCCCCGCcGGCGacGGa- -3'
miRNA:   3'- aUGCUGCUGgUG-GGGGCG-CCGU--CCau -5'
14070 5' -62 NC_003521.1 + 118157 0.67 0.705946
Target:  5'- gGCGACG-CCACCCcaCCGCcGCAGa-- -3'
miRNA:   3'- aUGCUGCuGGUGGG--GGCGcCGUCcau -5'
14070 5' -62 NC_003521.1 + 118212 0.67 0.687019
Target:  5'- aGCGcGCGGCCGCCgCCGUcgccgGGguGGUc -3'
miRNA:   3'- aUGC-UGCUGGUGGgGGCG-----CCguCCAu -5'
14070 5' -62 NC_003521.1 + 120936 0.71 0.462098
Target:  5'- cGCGGCGGCgGCUCCgGCgaggGGCAGGg- -3'
miRNA:   3'- aUGCUGCUGgUGGGGgCG----CCGUCCau -5'
14070 5' -62 NC_003521.1 + 121994 0.66 0.715331
Target:  5'- cAgGugGuugUCGCCCCgGUGGCAGGg- -3'
miRNA:   3'- aUgCugCu--GGUGGGGgCGCCGUCCau -5'
14070 5' -62 NC_003521.1 + 122428 0.66 0.724653
Target:  5'- cGCGACGACCACaaCgCC-CGGUGGGa- -3'
miRNA:   3'- aUGCUGCUGGUG--GgGGcGCCGUCCau -5'
14070 5' -62 NC_003521.1 + 122620 0.69 0.561603
Target:  5'- gGCGGCGGCCGCgcgcucggcggCCCCGacuuugcCGGCGGGc- -3'
miRNA:   3'- aUGCUGCUGGUG-----------GGGGC-------GCCGUCCau -5'
14070 5' -62 NC_003521.1 + 123585 0.68 0.60931
Target:  5'- gGCGGCGGCgccgggaGCCgCCGCGGCcgucagcGGGUGc -3'
miRNA:   3'- aUGCUGCUGg------UGGgGGCGCCG-------UCCAU- -5'
14070 5' -62 NC_003521.1 + 127350 0.67 0.66793
Target:  5'- cACGAUcuGCaCGCCCUccguggugCGCGGCAGGUGc -3'
miRNA:   3'- aUGCUGc-UG-GUGGGG--------GCGCCGUCCAU- -5'
14070 5' -62 NC_003521.1 + 128127 0.68 0.619881
Target:  5'- gGCGuuGACCACCCCCa--GCAGGa- -3'
miRNA:   3'- aUGCugCUGGUGGGGGcgcCGUCCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.