miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14070 5' -62 NC_003521.1 + 53234 0.67 0.687019
Target:  5'- gGCGaaGCGACCgccggcgaaGCCCCCGCGGacuuGGc- -3'
miRNA:   3'- aUGC--UGCUGG---------UGGGGGCGCCgu--CCau -5'
14070 5' -62 NC_003521.1 + 59612 0.68 0.619881
Target:  5'- -gUGGCGGCgGCCCCgGCGGCGa--- -3'
miRNA:   3'- auGCUGCUGgUGGGGgCGCCGUccau -5'
14070 5' -62 NC_003521.1 + 67491 0.68 0.619881
Target:  5'- cGCcuuCGACCGCaCCCUGUGGCcccAGGUGu -3'
miRNA:   3'- aUGcu-GCUGGUG-GGGGCGCCG---UCCAU- -5'
14070 5' -62 NC_003521.1 + 73220 0.66 0.76116
Target:  5'- gACGACGACCaacGCCaCCacgaGCGGCAa--- -3'
miRNA:   3'- aUGCUGCUGG---UGG-GGg---CGCCGUccau -5'
14070 5' -62 NC_003521.1 + 74698 0.67 0.677491
Target:  5'- aGCGACGGCgGCg-CCGCGGCAGcGg- -3'
miRNA:   3'- aUGCUGCUGgUGggGGCGCCGUC-Cau -5'
14070 5' -62 NC_003521.1 + 76076 0.67 0.687019
Target:  5'- -cCGGCGACCGCgaugccccccUCCCGCGcuGguGGUAg -3'
miRNA:   3'- auGCUGCUGGUG----------GGGGCGC--CguCCAU- -5'
14070 5' -62 NC_003521.1 + 76370 0.67 0.705946
Target:  5'- aGCGGCGACCgugACggCCGCGGCcgcGGUGg -3'
miRNA:   3'- aUGCUGCUGG---UGggGGCGCCGu--CCAU- -5'
14070 5' -62 NC_003521.1 + 77725 0.68 0.619881
Target:  5'- gGCGACGGCgGCCUCgguggGCGGCGucuGGUAg -3'
miRNA:   3'- aUGCUGCUGgUGGGGg----CGCCGU---CCAU- -5'
14070 5' -62 NC_003521.1 + 78624 0.66 0.724653
Target:  5'- cUGCG-CGGCuCGCCCCa--GGUAGGUGg -3'
miRNA:   3'- -AUGCuGCUG-GUGGGGgcgCCGUCCAU- -5'
14070 5' -62 NC_003521.1 + 79678 0.66 0.76116
Target:  5'- aACGACGuCCgcgACCgCCCGCGGCcGcGUu -3'
miRNA:   3'- aUGCUGCuGG---UGG-GGGCGCCGuC-CAu -5'
14070 5' -62 NC_003521.1 + 85091 0.67 0.69556
Target:  5'- gUACGGCGAaacuCCCCCaucggcggcggcaGCGGCGGGc- -3'
miRNA:   3'- -AUGCUGCUggu-GGGGG-------------CGCCGUCCau -5'
14070 5' -62 NC_003521.1 + 87736 0.66 0.724653
Target:  5'- gGCGGCGuggugggccccgGCCcggGCCCCgGCGGCGGa-- -3'
miRNA:   3'- aUGCUGC------------UGG---UGGGGgCGCCGUCcau -5'
14070 5' -62 NC_003521.1 + 91069 0.7 0.515888
Target:  5'- cGCG-CGGCCGCCCUCGCcGCAGa-- -3'
miRNA:   3'- aUGCuGCUGGUGGGGGCGcCGUCcau -5'
14070 5' -62 NC_003521.1 + 91946 0.66 0.752166
Target:  5'- -cCGGCGGCgGaCCCCGUGGCGGcGa- -3'
miRNA:   3'- auGCUGCUGgUgGGGGCGCCGUC-Cau -5'
14070 5' -62 NC_003521.1 + 92170 0.68 0.619881
Target:  5'- -uUGGCGGCCAUCCCCGcCGaGCucGGGg- -3'
miRNA:   3'- auGCUGCUGGUGGGGGC-GC-CG--UCCau -5'
14070 5' -62 NC_003521.1 + 98473 0.67 0.705946
Target:  5'- gGCGGCGGCCGCggcggCCGUGGCGGcGg- -3'
miRNA:   3'- aUGCUGCUGGUGgg---GGCGCCGUC-Cau -5'
14070 5' -62 NC_003521.1 + 98529 0.67 0.705946
Target:  5'- cGCGGCugGGCCGCUgCagcgGCGGCGGGUc -3'
miRNA:   3'- aUGCUG--CUGGUGGgGg---CGCCGUCCAu -5'
14070 5' -62 NC_003521.1 + 101182 0.66 0.76116
Target:  5'- gACGGCGuCCGCgCCCgGCgGGCGGa-- -3'
miRNA:   3'- aUGCUGCuGGUG-GGGgCG-CCGUCcau -5'
14070 5' -62 NC_003521.1 + 103660 0.69 0.562549
Target:  5'- gGCGGCGGCCGCUgcggCCGCGGCcauGGc- -3'
miRNA:   3'- aUGCUGCUGGUGGg---GGCGCCGu--CCau -5'
14070 5' -62 NC_003521.1 + 103888 0.67 0.705946
Target:  5'- gGgGAUGGgCugCCgCGCGGuCAGGUAa -3'
miRNA:   3'- aUgCUGCUgGugGGgGCGCC-GUCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.