miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14070 5' -62 NC_003521.1 + 7651 0.72 0.403299
Target:  5'- aACGGCGGCCGCCaCgGCGGCGcGGa- -3'
miRNA:   3'- aUGCUGCUGGUGGgGgCGCCGU-CCau -5'
14070 5' -62 NC_003521.1 + 14457 0.72 0.379589
Target:  5'- gGCGGCGucagccGCCGCUCCCGCGGCgcuacccgcGGGg- -3'
miRNA:   3'- aUGCUGC------UGGUGGGGGCGCCG---------UCCau -5'
14070 5' -62 NC_003521.1 + 16870 0.66 0.76116
Target:  5'- cUACGACGuGCguUCCCCGCGGCc---- -3'
miRNA:   3'- -AUGCUGC-UGguGGGGGCGCCGuccau -5'
14070 5' -62 NC_003521.1 + 17509 0.67 0.705946
Target:  5'- cACGGCGGuucCCGgCCCgGCGGCGcGGg- -3'
miRNA:   3'- aUGCUGCU---GGUgGGGgCGCCGU-CCau -5'
14070 5' -62 NC_003521.1 + 17824 0.68 0.648739
Target:  5'- gACGACGACC-CCCaCCGCcauaccaaguggGcGCAGGa- -3'
miRNA:   3'- aUGCUGCUGGuGGG-GGCG------------C-CGUCCau -5'
14070 5' -62 NC_003521.1 + 23212 0.67 0.696506
Target:  5'- gAUGGCGGCCgagacGCCCCUGCuGGUccGGGg- -3'
miRNA:   3'- aUGCUGCUGG-----UGGGGGCG-CCG--UCCau -5'
14070 5' -62 NC_003521.1 + 24266 0.76 0.235483
Target:  5'- gGCGGCGACCuggauCUCCCuCGGCAGGUc -3'
miRNA:   3'- aUGCUGCUGGu----GGGGGcGCCGUCCAu -5'
14070 5' -62 NC_003521.1 + 24858 0.69 0.562549
Target:  5'- -uCGcCGGCCACCuCUCGCaGCAGGUc -3'
miRNA:   3'- auGCuGCUGGUGG-GGGCGcCGUCCAu -5'
14070 5' -62 NC_003521.1 + 25689 0.7 0.506736
Target:  5'- cACGAUGcaaGCC-CCCUCGUGGCuGGUAc -3'
miRNA:   3'- aUGCUGC---UGGuGGGGGCGCCGuCCAU- -5'
14070 5' -62 NC_003521.1 + 28157 0.7 0.515888
Target:  5'- gGCGGCGACCAUgCCCGCGacgcccucuuCGGGUc -3'
miRNA:   3'- aUGCUGCUGGUGgGGGCGCc---------GUCCAu -5'
14070 5' -62 NC_003521.1 + 29903 0.7 0.506736
Target:  5'- gACGACGACCGacgaCCCGUGGCcgucaAGGg- -3'
miRNA:   3'- aUGCUGCUGGUgg--GGGCGCCG-----UCCau -5'
14070 5' -62 NC_003521.1 + 36583 0.66 0.715331
Target:  5'- aUGCG-CGaACUGgCCUgGCGGCGGGUGg -3'
miRNA:   3'- -AUGCuGC-UGGUgGGGgCGCCGUCCAU- -5'
14070 5' -62 NC_003521.1 + 37295 0.67 0.705946
Target:  5'- cUACGACauccacuucaACCACCagCCGCGGCAgacGGUAg -3'
miRNA:   3'- -AUGCUGc---------UGGUGGg-GGCGCCGU---CCAU- -5'
14070 5' -62 NC_003521.1 + 38907 0.66 0.752166
Target:  5'- cUGCGGCGuccCCGCCCUguguCGUGGCGGcaGUAg -3'
miRNA:   3'- -AUGCUGCu--GGUGGGG----GCGCCGUC--CAU- -5'
14070 5' -62 NC_003521.1 + 43642 0.67 0.696506
Target:  5'- gGCGGCGGCCGCCgCCGgaGaGCAGa-- -3'
miRNA:   3'- aUGCUGCUGGUGGgGGCg-C-CGUCcau -5'
14070 5' -62 NC_003521.1 + 43926 0.69 0.588228
Target:  5'- aACGACGACCcgccuuccgccccgGCCucaCCCGCGGUgccguugcuggAGGUGg -3'
miRNA:   3'- aUGCUGCUGG--------------UGG---GGGCGCCG-----------UCCAU- -5'
14070 5' -62 NC_003521.1 + 44676 0.68 0.61027
Target:  5'- cUGCGACGACCuguACUUCUGCuacacGCAGGUAc -3'
miRNA:   3'- -AUGCUGCUGG---UGGGGGCGc----CGUCCAU- -5'
14070 5' -62 NC_003521.1 + 45630 0.69 0.543722
Target:  5'- cGCaGACGGCCACCgCCGCcGGCuccgcgGGGUc -3'
miRNA:   3'- aUG-CUGCUGGUGGgGGCG-CCG------UCCAu -5'
14070 5' -62 NC_003521.1 + 48580 0.72 0.395292
Target:  5'- gACGgcuaACGGCCACCcuCCCGCGGCgccGGGUc -3'
miRNA:   3'- aUGC----UGCUGGUGG--GGGCGCCG---UCCAu -5'
14070 5' -62 NC_003521.1 + 51435 0.68 0.600673
Target:  5'- --aGAUGACgGCUCCCGUGGU-GGUAg -3'
miRNA:   3'- augCUGCUGgUGGGGGCGCCGuCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.