miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14070 5' -62 NC_003521.1 + 51435 0.68 0.600673
Target:  5'- --aGAUGACgGCUCCCGUGGU-GGUAg -3'
miRNA:   3'- augCUGCUGgUGGGGGCGCCGuCCAU- -5'
14070 5' -62 NC_003521.1 + 28157 0.7 0.515888
Target:  5'- gGCGGCGACCAUgCCCGCGacgcccucuuCGGGUc -3'
miRNA:   3'- aUGCUGCUGGUGgGGGCGCc---------GUCCAu -5'
14070 5' -62 NC_003521.1 + 131077 0.7 0.524181
Target:  5'- gGCGGCGACCgcggcucgcgcggGCUCCgGaCGGCGGGg- -3'
miRNA:   3'- aUGCUGCUGG-------------UGGGGgC-GCCGUCCau -5'
14070 5' -62 NC_003521.1 + 45630 0.69 0.543722
Target:  5'- cGCaGACGGCCACCgCCGCcGGCuccgcgGGGUc -3'
miRNA:   3'- aUG-CUGCUGGUGGgGGCG-CCG------UCCAu -5'
14070 5' -62 NC_003521.1 + 215291 0.69 0.562549
Target:  5'- --aGGCaGGCCACCgCCagcgGCGGCAGGUu -3'
miRNA:   3'- augCUG-CUGGUGG-GGg---CGCCGUCCAu -5'
14070 5' -62 NC_003521.1 + 145884 0.69 0.562549
Target:  5'- -cCGACGACgagGCCgCCgGCGGCGGGa- -3'
miRNA:   3'- auGCUGCUGg--UGG-GGgCGCCGUCCau -5'
14070 5' -62 NC_003521.1 + 196708 0.69 0.572029
Target:  5'- aGCGACGGCCgACUucaCCgGCGGCGacGGUGg -3'
miRNA:   3'- aUGCUGCUGG-UGG---GGgCGCCGU--CCAU- -5'
14070 5' -62 NC_003521.1 + 232198 0.69 0.581547
Target:  5'- cACGccAUGG--GCCCCCGCGGguGGUGg -3'
miRNA:   3'- aUGC--UGCUggUGGGGGCGCCguCCAU- -5'
14070 5' -62 NC_003521.1 + 140877 0.68 0.600673
Target:  5'- --aGGCGccGCCGCCCCCcuGCGuGCGGGa- -3'
miRNA:   3'- augCUGC--UGGUGGGGG--CGC-CGUCCau -5'
14070 5' -62 NC_003521.1 + 111930 0.7 0.513135
Target:  5'- -cCGACG-CCGCCCUCgacuaccuggcgcgGCGGCAGGa- -3'
miRNA:   3'- auGCUGCuGGUGGGGG--------------CGCCGUCCau -5'
14070 5' -62 NC_003521.1 + 215916 0.7 0.506736
Target:  5'- -cCGACGuCCAUCCcgcgucCCGCGGCAuGGUGa -3'
miRNA:   3'- auGCUGCuGGUGGG------GGCGCCGU-CCAU- -5'
14070 5' -62 NC_003521.1 + 206546 0.7 0.506736
Target:  5'- -cCGugGcCCGCCCCCGUGaCAGGa- -3'
miRNA:   3'- auGCugCuGGUGGGGGCGCcGUCCau -5'
14070 5' -62 NC_003521.1 + 24266 0.76 0.235483
Target:  5'- gGCGGCGACCuggauCUCCCuCGGCAGGUc -3'
miRNA:   3'- aUGCUGCUGGu----GGGGGcGCCGUCCAu -5'
14070 5' -62 NC_003521.1 + 157982 0.74 0.300943
Target:  5'- aGCGACG-CCGCCgCCCGCGGCGa--- -3'
miRNA:   3'- aUGCUGCuGGUGG-GGGCGCCGUccau -5'
14070 5' -62 NC_003521.1 + 148823 0.74 0.307544
Target:  5'- cGCGGCGACCGCCugCCCuCGGCcgAGGUGc -3'
miRNA:   3'- aUGCUGCUGGUGG--GGGcGCCG--UCCAU- -5'
14070 5' -62 NC_003521.1 + 120936 0.71 0.462098
Target:  5'- cGCGGCGGCgGCUCCgGCgaggGGCAGGg- -3'
miRNA:   3'- aUGCUGCUGgUGGGGgCG----CCGUCCau -5'
14070 5' -62 NC_003521.1 + 148425 0.71 0.462098
Target:  5'- gUGCgGGCGGCCGCgCCgGCGGCuccagGGGUGg -3'
miRNA:   3'- -AUG-CUGCUGGUGgGGgCGCCG-----UCCAU- -5'
14070 5' -62 NC_003521.1 + 226902 0.7 0.506736
Target:  5'- cACGGCGGCCagcgcgGCCUCCGCGGCccccuccgcgccGGGc- -3'
miRNA:   3'- aUGCUGCUGG------UGGGGGCGCCG------------UCCau -5'
14070 5' -62 NC_003521.1 + 137977 0.7 0.506736
Target:  5'- gACGugGugCGCUgugUCCGCGcGCAGGUc -3'
miRNA:   3'- aUGCugCugGUGG---GGGCGC-CGUCCAu -5'
14070 5' -62 NC_003521.1 + 25689 0.7 0.506736
Target:  5'- cACGAUGcaaGCC-CCCUCGUGGCuGGUAc -3'
miRNA:   3'- aUGCUGC---UGGuGGGGGCGCCGuCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.