miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14070 5' -62 NC_003521.1 + 142088 1.04 0.002831
Target:  5'- cUACGACGACCACCCCCGCGGCAGGUAc -3'
miRNA:   3'- -AUGCUGCUGGUGGGGGCGCCGUCCAU- -5'
14070 5' -62 NC_003521.1 + 191250 0.78 0.165878
Target:  5'- gGCGGCG-CCGCggCCCaCGCGGCAGGUGg -3'
miRNA:   3'- aUGCUGCuGGUG--GGG-GCGCCGUCCAU- -5'
14070 5' -62 NC_003521.1 + 116772 0.76 0.224949
Target:  5'- aGCGugGGCCGCCgCCGCGGCAcgcuGGc- -3'
miRNA:   3'- aUGCugCUGGUGGgGGCGCCGU----CCau -5'
14070 5' -62 NC_003521.1 + 24266 0.76 0.235483
Target:  5'- gGCGGCGACCuggauCUCCCuCGGCAGGUc -3'
miRNA:   3'- aUGCUGCUGGu----GGGGGcGCCGUCCAu -5'
14070 5' -62 NC_003521.1 + 157982 0.74 0.300943
Target:  5'- aGCGACG-CCGCCgCCCGCGGCGa--- -3'
miRNA:   3'- aUGCUGCuGGUGG-GGGCGCCGUccau -5'
14070 5' -62 NC_003521.1 + 148823 0.74 0.307544
Target:  5'- cGCGGCGACCGCCugCCCuCGGCcgAGGUGc -3'
miRNA:   3'- aUGCUGCUGGUGG--GGGcGCCG--UCCAU- -5'
14070 5' -62 NC_003521.1 + 117217 0.74 0.321076
Target:  5'- cUACGGCGGCUGCCCCUGCGacGCAaGGg- -3'
miRNA:   3'- -AUGCUGCUGGUGGGGGCGC--CGU-CCau -5'
14070 5' -62 NC_003521.1 + 141939 0.73 0.335049
Target:  5'- cGCGACGACggCGCCCCCuagcacgaGCGGC-GGUAg -3'
miRNA:   3'- aUGCUGCUG--GUGGGGG--------CGCCGuCCAU- -5'
14070 5' -62 NC_003521.1 + 14457 0.72 0.379589
Target:  5'- gGCGGCGucagccGCCGCUCCCGCGGCgcuacccgcGGGg- -3'
miRNA:   3'- aUGCUGC------UGGUGGGGGCGCCG---------UCCau -5'
14070 5' -62 NC_003521.1 + 48580 0.72 0.395292
Target:  5'- gACGgcuaACGGCCACCcuCCCGCGGCgccGGGUc -3'
miRNA:   3'- aUGC----UGCUGGUGG--GGGCGCCG---UCCAu -5'
14070 5' -62 NC_003521.1 + 7651 0.72 0.403299
Target:  5'- aACGGCGGCCGCCaCgGCGGCGcGGa- -3'
miRNA:   3'- aUGCUGCUGGUGGgGgCGCCGU-CCau -5'
14070 5' -62 NC_003521.1 + 117331 0.72 0.411408
Target:  5'- gGCGACGACgACaCCCCGCcGGCGacGGa- -3'
miRNA:   3'- aUGCUGCUGgUG-GGGGCG-CCGU--CCau -5'
14070 5' -62 NC_003521.1 + 198210 0.71 0.444828
Target:  5'- gGCGGCGACggCGCCgCCgGCGGCcguGGUAa -3'
miRNA:   3'- aUGCUGCUG--GUGG-GGgCGCCGu--CCAU- -5'
14070 5' -62 NC_003521.1 + 155365 0.71 0.462098
Target:  5'- cACGACGACCACCuuuCUCGCcGGCGcGGa- -3'
miRNA:   3'- aUGCUGCUGGUGG---GGGCG-CCGU-CCau -5'
14070 5' -62 NC_003521.1 + 148425 0.71 0.462098
Target:  5'- gUGCgGGCGGCCGCgCCgGCGGCuccagGGGUGg -3'
miRNA:   3'- -AUG-CUGCUGGUGgGGgCGCCG-----UCCAU- -5'
14070 5' -62 NC_003521.1 + 120936 0.71 0.462098
Target:  5'- cGCGGCGGCgGCUCCgGCgaggGGCAGGg- -3'
miRNA:   3'- aUGCUGCUGgUGGGGgCG----CCGUCCau -5'
14070 5' -62 NC_003521.1 + 223726 0.7 0.479715
Target:  5'- gUACGACGGCgGgUCCgGUGGCGGGa- -3'
miRNA:   3'- -AUGCUGCUGgUgGGGgCGCCGUCCau -5'
14070 5' -62 NC_003521.1 + 206546 0.7 0.506736
Target:  5'- -cCGugGcCCGCCCCCGUGaCAGGa- -3'
miRNA:   3'- auGCugCuGGUGGGGGCGCcGUCCau -5'
14070 5' -62 NC_003521.1 + 226902 0.7 0.506736
Target:  5'- cACGGCGGCCagcgcgGCCUCCGCGGCccccuccgcgccGGGc- -3'
miRNA:   3'- aUGCUGCUGG------UGGGGGCGCCG------------UCCau -5'
14070 5' -62 NC_003521.1 + 215916 0.7 0.506736
Target:  5'- -cCGACGuCCAUCCcgcgucCCGCGGCAuGGUGa -3'
miRNA:   3'- auGCUGCuGGUGGG------GGCGCCGU-CCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.