miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14070 5' -62 NC_003521.1 + 196327 0.65 0.767397
Target:  5'- gACGACGGCgGCUgCagcucgauuuccagCGCGuGCAGGUAg -3'
miRNA:   3'- aUGCUGCUGgUGGgG--------------GCGC-CGUCCAU- -5'
14070 5' -62 NC_003521.1 + 168669 0.66 0.752166
Target:  5'- gACGGCG-CCGgagguCCCUgGUGGCAGGc- -3'
miRNA:   3'- aUGCUGCuGGU-----GGGGgCGCCGUCCau -5'
14070 5' -62 NC_003521.1 + 221914 0.66 0.724653
Target:  5'- cGCGGCG-CCACCCuucggggcugCCGCGGCGc--- -3'
miRNA:   3'- aUGCUGCuGGUGGG----------GGCGCCGUccau -5'
14070 5' -62 NC_003521.1 + 91946 0.66 0.752166
Target:  5'- -cCGGCGGCgGaCCCCGUGGCGGcGa- -3'
miRNA:   3'- auGCUGCUGgUgGGGGCGCCGUC-Cau -5'
14070 5' -62 NC_003521.1 + 132684 0.66 0.743078
Target:  5'- gACGAuCGGCuCGCgCCCgGCuGGCGGGa- -3'
miRNA:   3'- aUGCU-GCUG-GUG-GGGgCG-CCGUCCau -5'
14070 5' -62 NC_003521.1 + 150406 0.66 0.743078
Target:  5'- gGCGGCGACgaGCCCggacccgucugUCGCGuGCAGGa- -3'
miRNA:   3'- aUGCUGCUGg-UGGG-----------GGCGC-CGUCCau -5'
14070 5' -62 NC_003521.1 + 122428 0.66 0.724653
Target:  5'- cGCGACGACCACaaCgCC-CGGUGGGa- -3'
miRNA:   3'- aUGCUGCUGGUG--GgGGcGCCGUCCau -5'
14070 5' -62 NC_003521.1 + 222149 0.66 0.743078
Target:  5'- gAUGAUGGuCCugcagcGCCCCCGUGGCcagcAGGUc -3'
miRNA:   3'- aUGCUGCU-GG------UGGGGGCGCCG----UCCAu -5'
14070 5' -62 NC_003521.1 + 101182 0.66 0.76116
Target:  5'- gACGGCGuCCGCgCCCgGCgGGCGGa-- -3'
miRNA:   3'- aUGCUGCuGGUG-GGGgCG-CCGUCcau -5'
14070 5' -62 NC_003521.1 + 178355 0.66 0.760265
Target:  5'- gACGACGACgGCgguuuccaaaaauCCCCgugcgcgcGCGGCGGGc- -3'
miRNA:   3'- aUGCUGCUGgUG-------------GGGG--------CGCCGUCCau -5'
14070 5' -62 NC_003521.1 + 142753 0.66 0.724653
Target:  5'- gGCGACGACggggugaccaGCgUCCGCGGCGGcGUc -3'
miRNA:   3'- aUGCUGCUGg---------UGgGGGCGCCGUC-CAu -5'
14070 5' -62 NC_003521.1 + 152472 0.66 0.724653
Target:  5'- gGCGGCGGCCACgaucuCCCCGaaGGagAGGUGc -3'
miRNA:   3'- aUGCUGCUGGUG-----GGGGCg-CCg-UCCAU- -5'
14070 5' -62 NC_003521.1 + 79678 0.66 0.76116
Target:  5'- aACGACGuCCgcgACCgCCCGCGGCcGcGUu -3'
miRNA:   3'- aUGCUGCuGG---UGG-GGGCGCCGuC-CAu -5'
14070 5' -62 NC_003521.1 + 16870 0.66 0.76116
Target:  5'- cUACGACGuGCguUCCCCGCGGCc---- -3'
miRNA:   3'- -AUGCUGC-UGguGGGGGCGCCGuccau -5'
14070 5' -62 NC_003521.1 + 138834 0.66 0.724653
Target:  5'- gGCGGCGGCUACggCCUGCGGCcagauGGg- -3'
miRNA:   3'- aUGCUGCUGGUGg-GGGCGCCGu----CCau -5'
14070 5' -62 NC_003521.1 + 165890 0.66 0.724653
Target:  5'- gGCGGCGgguacACCACCCCgCGCuGCcGGg- -3'
miRNA:   3'- aUGCUGC-----UGGUGGGG-GCGcCGuCCau -5'
14070 5' -62 NC_003521.1 + 151202 0.66 0.752166
Target:  5'- cGCGACGgucACCACCacggugaCCGCGGCGc--- -3'
miRNA:   3'- aUGCUGC---UGGUGGg------GGCGCCGUccau -5'
14070 5' -62 NC_003521.1 + 149309 0.66 0.721863
Target:  5'- cGCGACGACgCGgCCgCCGUGGUcucacgccucuucgAGGUGc -3'
miRNA:   3'- aUGCUGCUG-GUgGG-GGCGCCG--------------UCCAU- -5'
14070 5' -62 NC_003521.1 + 121994 0.66 0.715331
Target:  5'- cAgGugGuugUCGCCCCgGUGGCAGGg- -3'
miRNA:   3'- aUgCugCu--GGUGGGGgCGCCGUCCau -5'
14070 5' -62 NC_003521.1 + 218181 0.66 0.743078
Target:  5'- -gUGACGACgACCCagGCGuaGCAGGUGc -3'
miRNA:   3'- auGCUGCUGgUGGGggCGC--CGUCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.