miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14070 5' -62 NC_003521.1 + 196368 0.66 0.719068
Target:  5'- -uCGGCGAacacuuccaCCGCCuCCUgcguggugaagggcgGCGGCAGGUAg -3'
miRNA:   3'- auGCUGCU---------GGUGG-GGG---------------CGCCGUCCAU- -5'
14070 5' -62 NC_003521.1 + 73220 0.66 0.76116
Target:  5'- gACGACGACCaacGCCaCCacgaGCGGCAa--- -3'
miRNA:   3'- aUGCUGCUGG---UGG-GGg---CGCCGUccau -5'
14070 5' -62 NC_003521.1 + 167646 0.66 0.733904
Target:  5'- gAUGcCGGCCAgCUCCGCGcCAGGUc -3'
miRNA:   3'- aUGCuGCUGGUgGGGGCGCcGUCCAu -5'
14070 5' -62 NC_003521.1 + 121994 0.66 0.715331
Target:  5'- cAgGugGuugUCGCCCCgGUGGCAGGg- -3'
miRNA:   3'- aUgCugCu--GGUGGGGgCGCCGUCCau -5'
14070 5' -62 NC_003521.1 + 221914 0.66 0.724653
Target:  5'- cGCGGCG-CCACCCuucggggcugCCGCGGCGc--- -3'
miRNA:   3'- aUGCUGCuGGUGGG----------GGCGCCGUccau -5'
14070 5' -62 NC_003521.1 + 218611 0.66 0.715331
Target:  5'- gUACGGuuCGGCCGCCagCgCGCGGC-GGUAa -3'
miRNA:   3'- -AUGCU--GCUGGUGGg-G-GCGCCGuCCAU- -5'
14070 5' -62 NC_003521.1 + 149309 0.66 0.721863
Target:  5'- cGCGACGACgCGgCCgCCGUGGUcucacgccucuucgAGGUGc -3'
miRNA:   3'- aUGCUGCUG-GUgGG-GGCGCCG--------------UCCAU- -5'
14070 5' -62 NC_003521.1 + 138834 0.66 0.724653
Target:  5'- gGCGGCGGCUACggCCUGCGGCcagauGGg- -3'
miRNA:   3'- aUGCUGCUGGUGg-GGGCGCCGu----CCau -5'
14070 5' -62 NC_003521.1 + 122428 0.66 0.724653
Target:  5'- cGCGACGACCACaaCgCC-CGGUGGGa- -3'
miRNA:   3'- aUGCUGCUGGUG--GgGGcGCCGUCCau -5'
14070 5' -62 NC_003521.1 + 218181 0.66 0.743078
Target:  5'- -gUGACGACgACCCagGCGuaGCAGGUGc -3'
miRNA:   3'- auGCUGCUGgUGGGggCGC--CGUCCAU- -5'
14070 5' -62 NC_003521.1 + 132684 0.66 0.743078
Target:  5'- gACGAuCGGCuCGCgCCCgGCuGGCGGGa- -3'
miRNA:   3'- aUGCU-GCUG-GUG-GGGgCG-CCGUCCau -5'
14070 5' -62 NC_003521.1 + 152472 0.66 0.724653
Target:  5'- gGCGGCGGCCACgaucuCCCCGaaGGagAGGUGc -3'
miRNA:   3'- aUGCUGCUGGUG-----GGGGCg-CCg-UCCAU- -5'
14070 5' -62 NC_003521.1 + 165890 0.66 0.724653
Target:  5'- gGCGGCGgguacACCACCCCgCGCuGCcGGg- -3'
miRNA:   3'- aUGCUGC-----UGGUGGGG-GCGcCGuCCau -5'
14070 5' -62 NC_003521.1 + 142753 0.66 0.724653
Target:  5'- gGCGACGACggggugaccaGCgUCCGCGGCGGcGUc -3'
miRNA:   3'- aUGCUGCUGg---------UGgGGGCGCCGUC-CAu -5'
14070 5' -62 NC_003521.1 + 168669 0.66 0.752166
Target:  5'- gACGGCG-CCGgagguCCCUgGUGGCAGGc- -3'
miRNA:   3'- aUGCUGCuGGU-----GGGGgCGCCGUCCau -5'
14070 5' -62 NC_003521.1 + 111171 0.67 0.705946
Target:  5'- aGCG-CGGCCGCCCCgGCgacGGCGccgcggacGGUGg -3'
miRNA:   3'- aUGCuGCUGGUGGGGgCG---CCGU--------CCAU- -5'
14070 5' -62 NC_003521.1 + 103888 0.67 0.705946
Target:  5'- gGgGAUGGgCugCCgCGCGGuCAGGUAa -3'
miRNA:   3'- aUgCUGCUgGugGGgGCGCC-GUCCAU- -5'
14070 5' -62 NC_003521.1 + 199365 0.67 0.664098
Target:  5'- -uCGugGGCCACCaccgugguguagaCgGCGGCGGGg- -3'
miRNA:   3'- auGCugCUGGUGGg------------GgCGCCGUCCau -5'
14070 5' -62 NC_003521.1 + 169555 0.67 0.657384
Target:  5'- cGCGGCccCCGCCUCCGCcgauguuGGCGGGa- -3'
miRNA:   3'- aUGCUGcuGGUGGGGGCG-------CCGUCCau -5'
14070 5' -62 NC_003521.1 + 202753 0.67 0.66793
Target:  5'- aGCGACGGCCaccacaACCCCUGUacaGGCGcGUAa -3'
miRNA:   3'- aUGCUGCUGG------UGGGGGCG---CCGUcCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.