Results 21 - 40 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14070 | 5' | -62 | NC_003521.1 | + | 25689 | 0.7 | 0.506736 |
Target: 5'- cACGAUGcaaGCC-CCCUCGUGGCuGGUAc -3' miRNA: 3'- aUGCUGC---UGGuGGGGGCGCCGuCCAU- -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 137977 | 0.7 | 0.506736 |
Target: 5'- gACGugGugCGCUgugUCCGCGcGCAGGUc -3' miRNA: 3'- aUGCugCugGUGG---GGGCGC-CGUCCAu -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 226902 | 0.7 | 0.506736 |
Target: 5'- cACGGCGGCCagcgcgGCCUCCGCGGCccccuccgcgccGGGc- -3' miRNA: 3'- aUGCUGCUGG------UGGGGGCGCCG------------UCCau -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 111930 | 0.7 | 0.513135 |
Target: 5'- -cCGACG-CCGCCCUCgacuaccuggcgcgGCGGCAGGa- -3' miRNA: 3'- auGCUGCuGGUGGGGG--------------CGCCGUCCau -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 28157 | 0.7 | 0.515888 |
Target: 5'- gGCGGCGACCAUgCCCGCGacgcccucuuCGGGUc -3' miRNA: 3'- aUGCUGCUGGUGgGGGCGCc---------GUCCAu -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 91069 | 0.7 | 0.515888 |
Target: 5'- cGCG-CGGCCGCCCUCGCcGCAGa-- -3' miRNA: 3'- aUGCuGCUGGUGGGGGCGcCGUCcau -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 113782 | 0.7 | 0.521411 |
Target: 5'- gACGGCGACgGCCagcgcgacgggcaCCGCGGCGGcGUc -3' miRNA: 3'- aUGCUGCUGgUGGg------------GGCGCCGUC-CAu -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 131077 | 0.7 | 0.524181 |
Target: 5'- gGCGGCGACCgcggcucgcgcggGCUCCgGaCGGCGGGg- -3' miRNA: 3'- aUGCUGCUGG-------------UGGGGgC-GCCGUCCau -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 151793 | 0.7 | 0.534385 |
Target: 5'- aGCGGCGAggaacUCACCgCCGUGGCGccGGUGg -3' miRNA: 3'- aUGCUGCU-----GGUGGgGGCGCCGU--CCAU- -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 45630 | 0.69 | 0.543722 |
Target: 5'- cGCaGACGGCCACCgCCGCcGGCuccgcgGGGUc -3' miRNA: 3'- aUG-CUGCUGGUGGgGGCG-CCG------UCCAu -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 122620 | 0.69 | 0.561603 |
Target: 5'- gGCGGCGGCCGCgcgcucggcggCCCCGacuuugcCGGCGGGc- -3' miRNA: 3'- aUGCUGCUGGUG-----------GGGGC-------GCCGUCCau -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 145884 | 0.69 | 0.562549 |
Target: 5'- -cCGACGACgagGCCgCCgGCGGCGGGa- -3' miRNA: 3'- auGCUGCUGg--UGG-GGgCGCCGUCCau -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 24858 | 0.69 | 0.562549 |
Target: 5'- -uCGcCGGCCACCuCUCGCaGCAGGUc -3' miRNA: 3'- auGCuGCUGGUGG-GGGCGcCGUCCAu -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 215291 | 0.69 | 0.562549 |
Target: 5'- --aGGCaGGCCACCgCCagcgGCGGCAGGUu -3' miRNA: 3'- augCUG-CUGGUGG-GGg---CGCCGUCCAu -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 222544 | 0.69 | 0.562549 |
Target: 5'- cUGCGguGCGGCC-CUCCCGUcgcgGGCAGGUc -3' miRNA: 3'- -AUGC--UGCUGGuGGGGGCG----CCGUCCAu -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 103660 | 0.69 | 0.562549 |
Target: 5'- gGCGGCGGCCGCUgcggCCGCGGCcauGGc- -3' miRNA: 3'- aUGCUGCUGGUGGg---GGCGCCGu--CCau -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 196708 | 0.69 | 0.572029 |
Target: 5'- aGCGACGGCCgACUucaCCgGCGGCGacGGUGg -3' miRNA: 3'- aUGCUGCUGG-UGG---GGgCGCCGU--CCAU- -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 181262 | 0.69 | 0.572029 |
Target: 5'- --gGACGAa-ACCCCCGCGGCGccGGa- -3' miRNA: 3'- augCUGCUggUGGGGGCGCCGU--CCau -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 235134 | 0.69 | 0.581547 |
Target: 5'- gACGGCG-CCcguUCCCCGCGGaCGGGc- -3' miRNA: 3'- aUGCUGCuGGu--GGGGGCGCC-GUCCau -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 232198 | 0.69 | 0.581547 |
Target: 5'- cACGccAUGG--GCCCCCGCGGguGGUGg -3' miRNA: 3'- aUGC--UGCUggUGGGGGCGCCguCCAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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