Results 1 - 20 of 125 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14070 | 5' | -62 | NC_003521.1 | + | 142088 | 1.04 | 0.002831 |
Target: 5'- cUACGACGACCACCCCCGCGGCAGGUAc -3' miRNA: 3'- -AUGCUGCUGGUGGGGGCGCCGUCCAU- -5' |
|||||||
14070 | 5' | -62 | NC_003521.1 | + | 103660 | 0.69 | 0.562549 |
Target: 5'- gGCGGCGGCCGCUgcggCCGCGGCcauGGc- -3' miRNA: 3'- aUGCUGCUGGUGGg---GGCGCCGu--CCau -5' |
|||||||
14070 | 5' | -62 | NC_003521.1 | + | 181262 | 0.69 | 0.572029 |
Target: 5'- --gGACGAa-ACCCCCGCGGCGccGGa- -3' miRNA: 3'- augCUGCUggUGGGGGCGCCGU--CCau -5' |
|||||||
14070 | 5' | -62 | NC_003521.1 | + | 73220 | 0.66 | 0.76116 |
Target: 5'- gACGACGACCaacGCCaCCacgaGCGGCAa--- -3' miRNA: 3'- aUGCUGCUGG---UGG-GGg---CGCCGUccau -5' |
|||||||
14070 | 5' | -62 | NC_003521.1 | + | 14457 | 0.72 | 0.379589 |
Target: 5'- gGCGGCGucagccGCCGCUCCCGCGGCgcuacccgcGGGg- -3' miRNA: 3'- aUGCUGC------UGGUGGGGGCGCCG---------UCCau -5' |
|||||||
14070 | 5' | -62 | NC_003521.1 | + | 48580 | 0.72 | 0.395292 |
Target: 5'- gACGgcuaACGGCCACCcuCCCGCGGCgccGGGUc -3' miRNA: 3'- aUGC----UGCUGGUGG--GGGCGCCG---UCCAu -5' |
|||||||
14070 | 5' | -62 | NC_003521.1 | + | 117331 | 0.72 | 0.411408 |
Target: 5'- gGCGACGACgACaCCCCGCcGGCGacGGa- -3' miRNA: 3'- aUGCUGCUGgUG-GGGGCG-CCGU--CCau -5' |
|||||||
14070 | 5' | -62 | NC_003521.1 | + | 198210 | 0.71 | 0.444828 |
Target: 5'- gGCGGCGACggCGCCgCCgGCGGCcguGGUAa -3' miRNA: 3'- aUGCUGCUG--GUGG-GGgCGCCGu--CCAU- -5' |
|||||||
14070 | 5' | -62 | NC_003521.1 | + | 29903 | 0.7 | 0.506736 |
Target: 5'- gACGACGACCGacgaCCCGUGGCcgucaAGGg- -3' miRNA: 3'- aUGCUGCUGGUgg--GGGCGCCG-----UCCau -5' |
|||||||
14070 | 5' | -62 | NC_003521.1 | + | 24858 | 0.69 | 0.562549 |
Target: 5'- -uCGcCGGCCACCuCUCGCaGCAGGUc -3' miRNA: 3'- auGCuGCUGGUGG-GGGCGcCGUCCAu -5' |
|||||||
14070 | 5' | -62 | NC_003521.1 | + | 113782 | 0.7 | 0.521411 |
Target: 5'- gACGGCGACgGCCagcgcgacgggcaCCGCGGCGGcGUc -3' miRNA: 3'- aUGCUGCUGgUGGg------------GGCGCCGUC-CAu -5' |
|||||||
14070 | 5' | -62 | NC_003521.1 | + | 223726 | 0.7 | 0.479715 |
Target: 5'- gUACGACGGCgGgUCCgGUGGCGGGa- -3' miRNA: 3'- -AUGCUGCUGgUgGGGgCGCCGUCCau -5' |
|||||||
14070 | 5' | -62 | NC_003521.1 | + | 191250 | 0.78 | 0.165878 |
Target: 5'- gGCGGCG-CCGCggCCCaCGCGGCAGGUGg -3' miRNA: 3'- aUGCUGCuGGUG--GGG-GCGCCGUCCAU- -5' |
|||||||
14070 | 5' | -62 | NC_003521.1 | + | 151793 | 0.7 | 0.534385 |
Target: 5'- aGCGGCGAggaacUCACCgCCGUGGCGccGGUGg -3' miRNA: 3'- aUGCUGCU-----GGUGGgGGCGCCGU--CCAU- -5' |
|||||||
14070 | 5' | -62 | NC_003521.1 | + | 117217 | 0.74 | 0.321076 |
Target: 5'- cUACGGCGGCUGCCCCUGCGacGCAaGGg- -3' miRNA: 3'- -AUGCUGCUGGUGGGGGCGC--CGU-CCau -5' |
|||||||
14070 | 5' | -62 | NC_003521.1 | + | 155365 | 0.71 | 0.462098 |
Target: 5'- cACGACGACCACCuuuCUCGCcGGCGcGGa- -3' miRNA: 3'- aUGCUGCUGGUGG---GGGCG-CCGU-CCau -5' |
|||||||
14070 | 5' | -62 | NC_003521.1 | + | 122620 | 0.69 | 0.561603 |
Target: 5'- gGCGGCGGCCGCgcgcucggcggCCCCGacuuugcCGGCGGGc- -3' miRNA: 3'- aUGCUGCUGGUG-----------GGGGC-------GCCGUCCau -5' |
|||||||
14070 | 5' | -62 | NC_003521.1 | + | 222544 | 0.69 | 0.562549 |
Target: 5'- cUGCGguGCGGCC-CUCCCGUcgcgGGCAGGUc -3' miRNA: 3'- -AUGC--UGCUGGuGGGGGCG----CCGUCCAu -5' |
|||||||
14070 | 5' | -62 | NC_003521.1 | + | 141939 | 0.73 | 0.335049 |
Target: 5'- cGCGACGACggCGCCCCCuagcacgaGCGGC-GGUAg -3' miRNA: 3'- aUGCUGCUG--GUGGGGG--------CGCCGuCCAU- -5' |
|||||||
14070 | 5' | -62 | NC_003521.1 | + | 7651 | 0.72 | 0.403299 |
Target: 5'- aACGGCGGCCGCCaCgGCGGCGcGGa- -3' miRNA: 3'- aUGCUGCUGGUGGgGgCGCCGU-CCau -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home