miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14070 5' -62 NC_003521.1 + 235134 0.69 0.581547
Target:  5'- gACGGCG-CCcguUCCCCGCGGaCGGGc- -3'
miRNA:   3'- aUGCUGCuGGu--GGGGGCGCC-GUCCau -5'
14070 5' -62 NC_003521.1 + 232198 0.69 0.581547
Target:  5'- cACGccAUGG--GCCCCCGCGGguGGUGg -3'
miRNA:   3'- aUGC--UGCUggUGGGGGCGCCguCCAU- -5'
14070 5' -62 NC_003521.1 + 226902 0.7 0.506736
Target:  5'- cACGGCGGCCagcgcgGCCUCCGCGGCccccuccgcgccGGGc- -3'
miRNA:   3'- aUGCUGCUGG------UGGGGGCGCCG------------UCCau -5'
14070 5' -62 NC_003521.1 + 223726 0.7 0.479715
Target:  5'- gUACGACGGCgGgUCCgGUGGCGGGa- -3'
miRNA:   3'- -AUGCUGCUGgUgGGGgCGCCGUCCau -5'
14070 5' -62 NC_003521.1 + 222544 0.69 0.562549
Target:  5'- cUGCGguGCGGCC-CUCCCGUcgcgGGCAGGUc -3'
miRNA:   3'- -AUGC--UGCUGGuGGGGGCG----CCGUCCAu -5'
14070 5' -62 NC_003521.1 + 222149 0.66 0.743078
Target:  5'- gAUGAUGGuCCugcagcGCCCCCGUGGCcagcAGGUc -3'
miRNA:   3'- aUGCUGCU-GG------UGGGGGCGCCG----UCCAu -5'
14070 5' -62 NC_003521.1 + 222100 0.66 0.724653
Target:  5'- cACGAUcGCCGCCgCCaGCGGCAGc-- -3'
miRNA:   3'- aUGCUGcUGGUGGgGG-CGCCGUCcau -5'
14070 5' -62 NC_003521.1 + 221987 0.69 0.591097
Target:  5'- gACGACaGCCGCCuCUCGCGGUugcGGUc -3'
miRNA:   3'- aUGCUGcUGGUGG-GGGCGCCGu--CCAu -5'
14070 5' -62 NC_003521.1 + 221914 0.66 0.724653
Target:  5'- cGCGGCG-CCACCCuucggggcugCCGCGGCGc--- -3'
miRNA:   3'- aUGCUGCuGGUGGG----------GGCGCCGUccau -5'
14070 5' -62 NC_003521.1 + 218611 0.66 0.715331
Target:  5'- gUACGGuuCGGCCGCCagCgCGCGGC-GGUAa -3'
miRNA:   3'- -AUGCU--GCUGGUGGg-G-GCGCCGuCCAU- -5'
14070 5' -62 NC_003521.1 + 218181 0.66 0.743078
Target:  5'- -gUGACGACgACCCagGCGuaGCAGGUGc -3'
miRNA:   3'- auGCUGCUGgUGGGggCGC--CGUCCAU- -5'
14070 5' -62 NC_003521.1 + 217285 0.66 0.76116
Target:  5'- gGCGcUGGCCACCaccaCCGacaGGguGGUGa -3'
miRNA:   3'- aUGCuGCUGGUGGg---GGCg--CCguCCAU- -5'
14070 5' -62 NC_003521.1 + 215916 0.7 0.506736
Target:  5'- -cCGACGuCCAUCCcgcgucCCGCGGCAuGGUGa -3'
miRNA:   3'- auGCUGCuGGUGGG------GGCGCCGU-CCAU- -5'
14070 5' -62 NC_003521.1 + 215291 0.69 0.562549
Target:  5'- --aGGCaGGCCACCgCCagcgGCGGCAGGUu -3'
miRNA:   3'- augCUG-CUGGUGG-GGg---CGCCGUCCAu -5'
14070 5' -62 NC_003521.1 + 208610 0.68 0.648739
Target:  5'- uUGCGGCGGCCauaGCCagucaCCGCGGUgAGGc- -3'
miRNA:   3'- -AUGCUGCUGG---UGGg----GGCGCCG-UCCau -5'
14070 5' -62 NC_003521.1 + 206546 0.7 0.506736
Target:  5'- -cCGugGcCCGCCCCCGUGaCAGGa- -3'
miRNA:   3'- auGCugCuGGUGGGGGCGCcGUCCau -5'
14070 5' -62 NC_003521.1 + 202753 0.67 0.66793
Target:  5'- aGCGACGGCCaccacaACCCCUGUacaGGCGcGUAa -3'
miRNA:   3'- aUGCUGCUGG------UGGGGGCG---CCGUcCAU- -5'
14070 5' -62 NC_003521.1 + 201815 0.66 0.737584
Target:  5'- gGCGGCGcCCGCUCCgGCcucgacaccuaccuuGGguGGUAa -3'
miRNA:   3'- aUGCUGCuGGUGGGGgCG---------------CCguCCAU- -5'
14070 5' -62 NC_003521.1 + 199365 0.67 0.664098
Target:  5'- -uCGugGGCCACCaccgugguguagaCgGCGGCGGGg- -3'
miRNA:   3'- auGCugCUGGUGGg------------GgCGCCGUCCau -5'
14070 5' -62 NC_003521.1 + 198210 0.71 0.444828
Target:  5'- gGCGGCGACggCGCCgCCgGCGGCcguGGUAa -3'
miRNA:   3'- aUGCUGCUG--GUGG-GGgCGCCGu--CCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.