Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14073 | 3' | -55.3 | NC_003521.1 | + | 209259 | 0.66 | 0.955504 |
Target: 5'- aGCgUGUCCCgcgaccugggcUUCGcCGAguggucGCAGACGCUg -3' miRNA: 3'- aUG-ACAGGG-----------AAGCuGCU------CGUCUGCGA- -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 124285 | 0.66 | 0.959181 |
Target: 5'- gGCUGacgaucUCCagaaagcgCGGCGAGguGACGCa -3' miRNA: 3'- aUGAC------AGGgaa-----GCUGCUCguCUGCGa -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 117224 | 0.66 | 0.959181 |
Target: 5'- gGCUGcCCCUgCGACGcaagGGCAcgcaucacgcGGCGCUg -3' miRNA: 3'- aUGACaGGGAaGCUGC----UCGU----------CUGCGA- -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 172564 | 0.66 | 0.959181 |
Target: 5'- cGCUGUCCCggggUCGGCGGucGCAc-CGCc -3' miRNA: 3'- aUGACAGGGa---AGCUGCU--CGUcuGCGa -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 191608 | 0.66 | 0.959181 |
Target: 5'- aUGCccGUCCCUUCGugGAccGCGacuCGCUg -3' miRNA: 3'- -AUGa-CAGGGAAGCugCU--CGUcu-GCGA- -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 86849 | 0.66 | 0.962644 |
Target: 5'- aGCUG-CUCUaCGGCGuguGCaAGACGCUg -3' miRNA: 3'- aUGACaGGGAaGCUGCu--CG-UCUGCGA- -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 14366 | 0.67 | 0.933777 |
Target: 5'- gUGCUGguggCCCacaaccUgGACGAGCuGGCGCg -3' miRNA: 3'- -AUGACa---GGGa-----AgCUGCUCGuCUGCGa -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 164530 | 0.67 | 0.928747 |
Target: 5'- gUGCUGUCguugcUCUUCGACGAccgcgaggucucGCAGGCGg- -3' miRNA: 3'- -AUGACAG-----GGAAGCUGCU------------CGUCUGCga -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 170765 | 0.68 | 0.917994 |
Target: 5'- gUGCUGgCCCgacaGGCGGuGCAGACGUUu -3' miRNA: 3'- -AUGACaGGGaag-CUGCU-CGUCUGCGA- -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 61743 | 0.74 | 0.647519 |
Target: 5'- cUACUGUCaCCgaCGACGGGCAcgcgacccgcuGACGCUu -3' miRNA: 3'- -AUGACAG-GGaaGCUGCUCGU-----------CUGCGA- -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 16035 | 0.72 | 0.75551 |
Target: 5'- cGC-GUCCCgcaCGACGugguGCGGGCGCUg -3' miRNA: 3'- aUGaCAGGGaa-GCUGCu---CGUCUGCGA- -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 184346 | 0.71 | 0.80109 |
Target: 5'- gUACUGcCUCUUCgGGCGGGCcguGGCGCg -3' miRNA: 3'- -AUGACaGGGAAG-CUGCUCGu--CUGCGa -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 185160 | 0.71 | 0.80109 |
Target: 5'- cGgUGgggCCCgaCGACGAGguGGCGCa -3' miRNA: 3'- aUgACa--GGGaaGCUGCUCguCUGCGa -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 109706 | 0.71 | 0.809796 |
Target: 5'- cGCUGUCCCUUCc-CG-GCAGcCGCg -3' miRNA: 3'- aUGACAGGGAAGcuGCuCGUCuGCGa -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 6540 | 0.71 | 0.810658 |
Target: 5'- cUGC-GUCCCgccccagggcagggCGACGAGguGGCGCa -3' miRNA: 3'- -AUGaCAGGGaa------------GCUGCUCguCUGCGa -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 16199 | 0.69 | 0.880282 |
Target: 5'- gUGCUGgCCCUUCGAgGuGGCGG-CGCc -3' miRNA: 3'- -AUGACaGGGAAGCUgC-UCGUCuGCGa -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 93753 | 0.69 | 0.880282 |
Target: 5'- aACUGUCCCUUCaGAUGAu--GAUGCg -3' miRNA: 3'- aUGACAGGGAAG-CUGCUcguCUGCGa -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 111863 | 0.69 | 0.880282 |
Target: 5'- cGCcGUa-CUUCGugGuGCAGACGCUg -3' miRNA: 3'- aUGaCAggGAAGCugCuCGUCUGCGA- -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 6965 | 0.69 | 0.893092 |
Target: 5'- -cCUGUUCCUcgGACGAcaggaccGCAGACGCa -3' miRNA: 3'- auGACAGGGAagCUGCU-------CGUCUGCGa -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 16090 | 0.68 | 0.912273 |
Target: 5'- cGCUGgccgCCUgcgUCGGCGAGCaccacgggcgGGACGUg -3' miRNA: 3'- aUGACa---GGGa--AGCUGCUCG----------UCUGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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