miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14073 3' -55.3 NC_003521.1 + 25250 0.74 0.627409
Target:  5'- --gUGUCCUUuaUCGGCGAGCgucGGACGCa -3'
miRNA:   3'- augACAGGGA--AGCUGCUCG---UCUGCGa -5'
14073 3' -55.3 NC_003521.1 + 136868 0.66 0.968352
Target:  5'- cGCUGUCCCgacaagcgcaucUCgGGCucGCAGAUGCUc -3'
miRNA:   3'- aUGACAGGGa-----------AG-CUGcuCGUCUGCGA- -5'
14073 3' -55.3 NC_003521.1 + 53534 0.66 0.955504
Target:  5'- gUGCUGUCCgCUcCGGguCGAGguGcCGCUg -3'
miRNA:   3'- -AUGACAGG-GAaGCU--GCUCguCuGCGA- -5'
14073 3' -55.3 NC_003521.1 + 61867 0.66 0.955124
Target:  5'- -cCUGUCCaugCGaccaccacggauaGCGAGCAGAUGCc -3'
miRNA:   3'- auGACAGGgaaGC-------------UGCUCGUCUGCGa -5'
14073 3' -55.3 NC_003521.1 + 102511 0.67 0.944911
Target:  5'- cGCagGUCCaugUCggccacgaaguugaaGACGGGCAGGCGCUc -3'
miRNA:   3'- aUGa-CAGGga-AG---------------CUGCUCGUCUGCGA- -5'
14073 3' -55.3 NC_003521.1 + 165432 0.67 0.943147
Target:  5'- uUGCUGgugUUCUUgGGCGAGgGGugGCa -3'
miRNA:   3'- -AUGACa--GGGAAgCUGCUCgUCugCGa -5'
14073 3' -55.3 NC_003521.1 + 201608 0.67 0.938577
Target:  5'- cGCUGUCCCcgagccCG-CGcugcuGCGGACGCUg -3'
miRNA:   3'- aUGACAGGGaa----GCuGCu----CGUCUGCGA- -5'
14073 3' -55.3 NC_003521.1 + 123895 0.67 0.938577
Target:  5'- aGCUGUCgCgugcugUCGGCGcGCGG-CGCUg -3'
miRNA:   3'- aUGACAGgGa-----AGCUGCuCGUCuGCGA- -5'
14073 3' -55.3 NC_003521.1 + 145861 0.67 0.933777
Target:  5'- -uCUGggCCCggCGGCGGGCGG-CGCc -3'
miRNA:   3'- auGACa-GGGaaGCUGCUCGUCuGCGa -5'
14073 3' -55.3 NC_003521.1 + 79155 0.67 0.928747
Target:  5'- cGCUG-CCCgaaGACGuugacGCAGAUGCUg -3'
miRNA:   3'- aUGACaGGGaagCUGCu----CGUCUGCGA- -5'
14073 3' -55.3 NC_003521.1 + 196762 0.68 0.906322
Target:  5'- cUGCUGcCCCggcCGGCGcgaccGCGGGCGCg -3'
miRNA:   3'- -AUGACaGGGaa-GCUGCu----CGUCUGCGa -5'
14073 3' -55.3 NC_003521.1 + 181460 0.71 0.792236
Target:  5'- aUGCUGUCCCagUCGGC--GCAGACGg- -3'
miRNA:   3'- -AUGACAGGGa-AGCUGcuCGUCUGCga -5'
14073 3' -55.3 NC_003521.1 + 60733 0.74 0.647519
Target:  5'- cGCUGcccUCCCUg-GACGGGguGACGCg -3'
miRNA:   3'- aUGAC---AGGGAagCUGCUCguCUGCGa -5'
14073 3' -55.3 NC_003521.1 + 84616 0.74 0.627409
Target:  5'- cACgucGUCCCUUCGACGuaGGCuuccuGACGCg -3'
miRNA:   3'- aUGa--CAGGGAAGCUGC--UCGu----CUGCGa -5'
14073 3' -55.3 NC_003521.1 + 109706 0.71 0.809796
Target:  5'- cGCUGUCCCUUCc-CG-GCAGcCGCg -3'
miRNA:   3'- aUGACAGGGAAGcuGCuCGUCuGCGa -5'
14073 3' -55.3 NC_003521.1 + 185160 0.71 0.80109
Target:  5'- cGgUGgggCCCgaCGACGAGguGGCGCa -3'
miRNA:   3'- aUgACa--GGGaaGCUGCUCguCUGCGa -5'
14073 3' -55.3 NC_003521.1 + 184346 0.71 0.80109
Target:  5'- gUACUGcCUCUUCgGGCGGGCcguGGCGCg -3'
miRNA:   3'- -AUGACaGGGAAG-CUGCUCGu--CUGCGa -5'
14073 3' -55.3 NC_003521.1 + 16035 0.72 0.75551
Target:  5'- cGC-GUCCCgcaCGACGugguGCGGGCGCUg -3'
miRNA:   3'- aUGaCAGGGaa-GCUGCu---CGUCUGCGA- -5'
14073 3' -55.3 NC_003521.1 + 61743 0.74 0.647519
Target:  5'- cUACUGUCaCCgaCGACGGGCAcgcgacccgcuGACGCUu -3'
miRNA:   3'- -AUGACAG-GGaaGCUGCUCGU-----------CUGCGA- -5'
14073 3' -55.3 NC_003521.1 + 163004 0.66 0.971794
Target:  5'- cGC-GUCaUCUUCGACGGGCAGcagaucCGCa -3'
miRNA:   3'- aUGaCAG-GGAAGCUGCUCGUCu-----GCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.