miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14073 3' -55.3 NC_003521.1 + 1381 0.67 0.938577
Target:  5'- cGCUGUCCCcgagccCG-CGcugcuGCGGACGCUg -3'
miRNA:   3'- aUGACAGGGaa----GCuGCu----CGUCUGCGA- -5'
14073 3' -55.3 NC_003521.1 + 6540 0.71 0.810658
Target:  5'- cUGC-GUCCCgccccagggcagggCGACGAGguGGCGCa -3'
miRNA:   3'- -AUGaCAGGGaa------------GCUGCUCguCUGCGa -5'
14073 3' -55.3 NC_003521.1 + 6965 0.69 0.893092
Target:  5'- -cCUGUUCCUcgGACGAcaggaccGCAGACGCa -3'
miRNA:   3'- auGACAGGGAagCUGCU-------CGUCUGCGa -5'
14073 3' -55.3 NC_003521.1 + 13590 0.66 0.968945
Target:  5'- gAUUGgcccCCCUggCGACGAGUggaaugggGGGCGCg -3'
miRNA:   3'- aUGACa---GGGAa-GCUGCUCG--------UCUGCGa -5'
14073 3' -55.3 NC_003521.1 + 14366 0.67 0.933777
Target:  5'- gUGCUGguggCCCacaaccUgGACGAGCuGGCGCg -3'
miRNA:   3'- -AUGACa---GGGa-----AgCUGCUCGuCUGCGa -5'
14073 3' -55.3 NC_003521.1 + 16035 0.72 0.75551
Target:  5'- cGC-GUCCCgcaCGACGugguGCGGGCGCUg -3'
miRNA:   3'- aUGaCAGGGaa-GCUGCu---CGUCUGCGA- -5'
14073 3' -55.3 NC_003521.1 + 16090 0.68 0.912273
Target:  5'- cGCUGgccgCCUgcgUCGGCGAGCaccacgggcgGGACGUg -3'
miRNA:   3'- aUGACa---GGGa--AGCUGCUCG----------UCUGCGa -5'
14073 3' -55.3 NC_003521.1 + 16199 0.69 0.880282
Target:  5'- gUGCUGgCCCUUCGAgGuGGCGG-CGCc -3'
miRNA:   3'- -AUGACaGGGAAGCUgC-UCGUCuGCGa -5'
14073 3' -55.3 NC_003521.1 + 25250 0.74 0.627409
Target:  5'- --gUGUCCUUuaUCGGCGAGCgucGGACGCa -3'
miRNA:   3'- augACAGGGA--AGCUGCUCG---UCUGCGa -5'
14073 3' -55.3 NC_003521.1 + 49781 0.67 0.951608
Target:  5'- aACUGagCg-UCGGCcAGCAGACGCUg -3'
miRNA:   3'- aUGACagGgaAGCUGcUCGUCUGCGA- -5'
14073 3' -55.3 NC_003521.1 + 53534 0.66 0.955504
Target:  5'- gUGCUGUCCgCUcCGGguCGAGguGcCGCUg -3'
miRNA:   3'- -AUGACAGG-GAaGCU--GCUCguCuGCGA- -5'
14073 3' -55.3 NC_003521.1 + 60733 0.74 0.647519
Target:  5'- cGCUGcccUCCCUg-GACGGGguGACGCg -3'
miRNA:   3'- aUGAC---AGGGAagCUGCUCguCUGCGa -5'
14073 3' -55.3 NC_003521.1 + 61743 0.74 0.647519
Target:  5'- cUACUGUCaCCgaCGACGGGCAcgcgacccgcuGACGCUu -3'
miRNA:   3'- -AUGACAG-GGaaGCUGCUCGU-----------CUGCGA- -5'
14073 3' -55.3 NC_003521.1 + 61867 0.66 0.955124
Target:  5'- -cCUGUCCaugCGaccaccacggauaGCGAGCAGAUGCc -3'
miRNA:   3'- auGACAGGgaaGC-------------UGCUCGUCUGCGa -5'
14073 3' -55.3 NC_003521.1 + 74807 0.67 0.943147
Target:  5'- aUGCUGaaCCC--CGACGAGCAGGCucGCg -3'
miRNA:   3'- -AUGACa-GGGaaGCUGCUCGUCUG--CGa -5'
14073 3' -55.3 NC_003521.1 + 79155 0.67 0.928747
Target:  5'- cGCUG-CCCgaaGACGuugacGCAGAUGCUg -3'
miRNA:   3'- aUGACaGGGaagCUGCu----CGUCUGCGA- -5'
14073 3' -55.3 NC_003521.1 + 84616 0.74 0.627409
Target:  5'- cACgucGUCCCUUCGACGuaGGCuuccuGACGCg -3'
miRNA:   3'- aUGa--CAGGGAAGCUGC--UCGu----CUGCGa -5'
14073 3' -55.3 NC_003521.1 + 86849 0.66 0.962644
Target:  5'- aGCUG-CUCUaCGGCGuguGCaAGACGCUg -3'
miRNA:   3'- aUGACaGGGAaGCUGCu--CG-UCUGCGA- -5'
14073 3' -55.3 NC_003521.1 + 93753 0.69 0.880282
Target:  5'- aACUGUCCCUUCaGAUGAu--GAUGCg -3'
miRNA:   3'- aUGACAGGGAAG-CUGCUcguCUGCGa -5'
14073 3' -55.3 NC_003521.1 + 102511 0.67 0.944911
Target:  5'- cGCagGUCCaugUCggccacgaaguugaaGACGGGCAGGCGCUc -3'
miRNA:   3'- aUGa-CAGGga-AG---------------CUGCUCGUCUGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.