miRNA display CGI


Results 21 - 40 of 294 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14073 5' -54.9 NC_003521.1 + 21608 0.67 0.954068
Target:  5'- cCugCAacUCUgcuGCCuGGCGACCGCCAu -3'
miRNA:   3'- aGugGU--AGAag-CGG-CUGCUGGUGGUc -5'
14073 5' -54.9 NC_003521.1 + 22126 0.68 0.950135
Target:  5'- cCGCCGUCUccuccgccuUCGCCGcCGcCCucuuACCGGg -3'
miRNA:   3'- aGUGGUAGA---------AGCGGCuGCuGG----UGGUC- -5'
14073 5' -54.9 NC_003521.1 + 23615 0.66 0.980335
Target:  5'- uUCGCgAUCUgcacCGCCGugGcCUGCCuGg -3'
miRNA:   3'- -AGUGgUAGAa---GCGGCugCuGGUGGuC- -5'
14073 5' -54.9 NC_003521.1 + 24145 0.68 0.937019
Target:  5'- -uGCCuauaacgUCGCCG-CGACCACCGc -3'
miRNA:   3'- agUGGuaga---AGCGGCuGCUGGUGGUc -5'
14073 5' -54.9 NC_003521.1 + 24849 0.73 0.736259
Target:  5'- gCAUCAUCUUCGCCGGCcACCucuCgCAGc -3'
miRNA:   3'- aGUGGUAGAAGCGGCUGcUGGu--G-GUC- -5'
14073 5' -54.9 NC_003521.1 + 26258 0.66 0.978163
Target:  5'- aCGCCAg---CGCUGcUGcACCACCAGg -3'
miRNA:   3'- aGUGGUagaaGCGGCuGC-UGGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 27067 0.72 0.773487
Target:  5'- -gGCCAUCUUCuaCGugGccGCCACCAc -3'
miRNA:   3'- agUGGUAGAAGcgGCugC--UGGUGGUc -5'
14073 5' -54.9 NC_003521.1 + 28455 0.67 0.961291
Target:  5'- gUCGCCAUCca-GCCuugGGCgGugCACCAGc -3'
miRNA:   3'- -AGUGGUAGaagCGG---CUG-CugGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 28972 0.7 0.878775
Target:  5'- cUACCGUCagaaccUGCagaagcucaaCGACGACCACCAGg -3'
miRNA:   3'- aGUGGUAGaa----GCG----------GCUGCUGGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 31271 0.66 0.982342
Target:  5'- cCACCGUCgcCGCC-ACc-CCGCCGGg -3'
miRNA:   3'- aGUGGUAGaaGCGGcUGcuGGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 31613 0.67 0.961291
Target:  5'- cCACCGUCaggUgGCgGAUGGCCGgUAGg -3'
miRNA:   3'- aGUGGUAGa--AgCGgCUGCUGGUgGUC- -5'
14073 5' -54.9 NC_003521.1 + 35933 0.66 0.978163
Target:  5'- cCACCGUCc-CGCCGcGCGGCCAaUCGc -3'
miRNA:   3'- aGUGGUAGaaGCGGC-UGCUGGU-GGUc -5'
14073 5' -54.9 NC_003521.1 + 36042 0.67 0.954068
Target:  5'- -gGCCcUCUUCGCCGuaaGcCCGCCGc -3'
miRNA:   3'- agUGGuAGAAGCGGCug-CuGGUGGUc -5'
14073 5' -54.9 NC_003521.1 + 37819 0.67 0.957785
Target:  5'- aC-CCGUCUUgGCgGGCGAgCCGCcCGGa -3'
miRNA:   3'- aGuGGUAGAAgCGgCUGCU-GGUG-GUC- -5'
14073 5' -54.9 NC_003521.1 + 39483 0.68 0.937019
Target:  5'- gUCGCCG-CcUCGUgGACGauggugGCCACCAGc -3'
miRNA:   3'- -AGUGGUaGaAGCGgCUGC------UGGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 41317 0.68 0.937019
Target:  5'- uUCGCCAcagucgcgcUCaUCGCCGcCGAUCGCUAu -3'
miRNA:   3'- -AGUGGU---------AGaAGCGGCuGCUGGUGGUc -5'
14073 5' -54.9 NC_003521.1 + 42616 0.67 0.96459
Target:  5'- cCGCCggCggCGCCGuCG-CCGCCAu -3'
miRNA:   3'- aGUGGuaGaaGCGGCuGCuGGUGGUc -5'
14073 5' -54.9 NC_003521.1 + 42977 0.7 0.878775
Target:  5'- cCGCCGg---CGCCcaccGACGACCugCAGa -3'
miRNA:   3'- aGUGGUagaaGCGG----CUGCUGGugGUC- -5'
14073 5' -54.9 NC_003521.1 + 43342 0.68 0.9322
Target:  5'- gCGCCGUCcggccCGCCGcGCGugaacauCCGCCAGa -3'
miRNA:   3'- aGUGGUAGaa---GCGGC-UGCu------GGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 43478 0.67 0.957785
Target:  5'- aCGCCA-CgaaggaGCCGAUGACCucgcCCAGg -3'
miRNA:   3'- aGUGGUaGaag---CGGCUGCUGGu---GGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.