miRNA display CGI


Results 1 - 20 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14073 5' -54.9 NC_003521.1 + 781 0.67 0.954068
Target:  5'- gCGCCAUCg--GCgGAgGACCGCCc- -3'
miRNA:   3'- aGUGGUAGaagCGgCUgCUGGUGGuc -5'
14073 5' -54.9 NC_003521.1 + 910 0.76 0.569074
Target:  5'- gCACCAUCUggCGCaCGGCGuucauggcuaacACCACCAGc -3'
miRNA:   3'- aGUGGUAGAa-GCG-GCUGC------------UGGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 1072 0.68 0.937019
Target:  5'- gCGCCAgCUcUCGCCGcGCGACCcCUGGa -3'
miRNA:   3'- aGUGGUaGA-AGCGGC-UGCUGGuGGUC- -5'
14073 5' -54.9 NC_003521.1 + 1284 0.67 0.957785
Target:  5'- cCGCCcgCgaCGCCGACGAaugguuCCGCUAc -3'
miRNA:   3'- aGUGGuaGaaGCGGCUGCU------GGUGGUc -5'
14073 5' -54.9 NC_003521.1 + 1577 0.71 0.832937
Target:  5'- cCGCCGUCgcUGCUGACGGCCgugcagcGCCAc -3'
miRNA:   3'- aGUGGUAGaaGCGGCUGCUGG-------UGGUc -5'
14073 5' -54.9 NC_003521.1 + 2256 0.71 0.817283
Target:  5'- -uGCCGUCUUCgGCUacugcccccagGACGGCCACCu- -3'
miRNA:   3'- agUGGUAGAAG-CGG-----------CUGCUGGUGGuc -5'
14073 5' -54.9 NC_003521.1 + 3658 0.66 0.978163
Target:  5'- cCGCCGUCU--GCCu-CGGCgGCCGGg -3'
miRNA:   3'- aGUGGUAGAagCGGcuGCUGgUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 8004 0.66 0.978163
Target:  5'- gUACCGgggCagCGCCGuagcuccaGACCGCCGGa -3'
miRNA:   3'- aGUGGUa--GaaGCGGCug------CUGGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 11556 0.7 0.864539
Target:  5'- aCGCC-UCcggCGCCGuCGugCGCCGGa -3'
miRNA:   3'- aGUGGuAGaa-GCGGCuGCugGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 12539 0.66 0.982342
Target:  5'- --uCCA-CUUCGCCGugGAggaCGCCGa -3'
miRNA:   3'- aguGGUaGAAGCGGCugCUg--GUGGUc -5'
14073 5' -54.9 NC_003521.1 + 12559 0.66 0.973296
Target:  5'- cUCACCGUgCUg-GCCaaacCGACCACCAc -3'
miRNA:   3'- -AGUGGUA-GAagCGGcu--GCUGGUGGUc -5'
14073 5' -54.9 NC_003521.1 + 14326 0.66 0.980335
Target:  5'- uUCGCgCAUCUaCGCCuACGACacccgcgACCAGu -3'
miRNA:   3'- -AGUG-GUAGAaGCGGcUGCUGg------UGGUC- -5'
14073 5' -54.9 NC_003521.1 + 14919 0.66 0.982342
Target:  5'- gUCACCGgcgCUUCGagcgCGAgCGGCagCGCCAGa -3'
miRNA:   3'- -AGUGGUa--GAAGCg---GCU-GCUG--GUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 14985 0.7 0.864539
Target:  5'- cCACCA-CgagcgCGCCGugGACCACa-- -3'
miRNA:   3'- aGUGGUaGaa---GCGGCugCUGGUGguc -5'
14073 5' -54.9 NC_003521.1 + 16094 0.67 0.961291
Target:  5'- -gGCCGcCUgCGUCGGCGAgCACCAc -3'
miRNA:   3'- agUGGUaGAaGCGGCUGCUgGUGGUc -5'
14073 5' -54.9 NC_003521.1 + 16698 0.68 0.951734
Target:  5'- uUCACCAUgUggcagacgcgCGUgaugcgcggcgaguuCGGCGACCGCCGGc -3'
miRNA:   3'- -AGUGGUAgAa---------GCG---------------GCUGCUGGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 17055 0.72 0.791419
Target:  5'- gCACCAgcagCGCCGACGAuaCCGCUGGc -3'
miRNA:   3'- aGUGGUagaaGCGGCUGCU--GGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 17950 0.66 0.975819
Target:  5'- cUCAagGUCUUCGCCaGAaCGGCCugCu- -3'
miRNA:   3'- -AGUggUAGAAGCGG-CU-GCUGGugGuc -5'
14073 5' -54.9 NC_003521.1 + 19013 0.67 0.970587
Target:  5'- aCGCCcgCccCGCCGACGGagcccaugcCCGCCGa -3'
miRNA:   3'- aGUGGuaGaaGCGGCUGCU---------GGUGGUc -5'
14073 5' -54.9 NC_003521.1 + 21114 0.73 0.755078
Target:  5'- -gACCGUUgccuccgcUGCCGACGACCcGCCAGa -3'
miRNA:   3'- agUGGUAGaa------GCGGCUGCUGG-UGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.