miRNA display CGI


Results 1 - 20 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14073 5' -54.9 NC_003521.1 + 162721 0.66 0.978163
Target:  5'- gCACCAgagCgucaaccacUCGuUCGACGugCGCCAGu -3'
miRNA:   3'- aGUGGUa--Ga--------AGC-GGCUGCugGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 26258 0.66 0.978163
Target:  5'- aCGCCAg---CGCUGcUGcACCACCAGg -3'
miRNA:   3'- aGUGGUagaaGCGGCuGC-UGGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 122412 0.66 0.973296
Target:  5'- cCACCAUCgacccggaCG-CGACGACCACa-- -3'
miRNA:   3'- aGUGGUAGaa------GCgGCUGCUGGUGguc -5'
14073 5' -54.9 NC_003521.1 + 192017 0.66 0.976061
Target:  5'- uUCAUCGUCgucagguucugcacCGCCGGCGugCGCggCAGa -3'
miRNA:   3'- -AGUGGUAGaa------------GCGGCUGCugGUG--GUC- -5'
14073 5' -54.9 NC_003521.1 + 140861 0.66 0.975819
Target:  5'- uUCGCgGUCUcgGCCGAgGcGCCGCCGc -3'
miRNA:   3'- -AGUGgUAGAagCGGCUgC-UGGUGGUc -5'
14073 5' -54.9 NC_003521.1 + 111852 0.66 0.975575
Target:  5'- gCAUCGUCUUuuuccagCGCC-ACG-CCGCCAGc -3'
miRNA:   3'- aGUGGUAGAA-------GCGGcUGCuGGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 3658 0.66 0.978163
Target:  5'- cCGCCGUCU--GCCu-CGGCgGCCGGg -3'
miRNA:   3'- aGUGGUAGAagCGGcuGCUGgUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 75618 0.66 0.975819
Target:  5'- gCGCCAcggCUcagUCGCCGACGAUgACg-- -3'
miRNA:   3'- aGUGGUa--GA---AGCGGCUGCUGgUGguc -5'
14073 5' -54.9 NC_003521.1 + 35933 0.66 0.978163
Target:  5'- cCACCGUCc-CGCCGcGCGGCCAaUCGc -3'
miRNA:   3'- aGUGGUAGaaGCGGC-UGCUGGU-GGUc -5'
14073 5' -54.9 NC_003521.1 + 153496 0.66 0.982342
Target:  5'- -gGCCGUCUggucagCGCCagcGugGACCGCa-- -3'
miRNA:   3'- agUGGUAGAa-----GCGG---CugCUGGUGguc -5'
14073 5' -54.9 NC_003521.1 + 45339 0.66 0.980126
Target:  5'- -gACC-UCUUCGCCGACGuggaacgGCgACCc- -3'
miRNA:   3'- agUGGuAGAAGCGGCUGC-------UGgUGGuc -5'
14073 5' -54.9 NC_003521.1 + 142907 0.66 0.977937
Target:  5'- gCGCCAUCa--GCCGGCGACgucggcgUugCAGc -3'
miRNA:   3'- aGUGGUAGaagCGGCUGCUG-------GugGUC- -5'
14073 5' -54.9 NC_003521.1 + 12559 0.66 0.973296
Target:  5'- cUCACCGUgCUg-GCCaaacCGACCACCAc -3'
miRNA:   3'- -AGUGGUA-GAagCGGcu--GCUGGUGGUc -5'
14073 5' -54.9 NC_003521.1 + 111909 0.66 0.973296
Target:  5'- cCGCCcgCUUCGaccuguguaCCGACG-CCGCCc- -3'
miRNA:   3'- aGUGGuaGAAGC---------GGCUGCuGGUGGuc -5'
14073 5' -54.9 NC_003521.1 + 59990 0.66 0.975819
Target:  5'- cUACCGgcUCUUCaCCGGCaGCCugCAGc -3'
miRNA:   3'- aGUGGU--AGAAGcGGCUGcUGGugGUC- -5'
14073 5' -54.9 NC_003521.1 + 146911 0.66 0.973296
Target:  5'- gUCGCCG-CUU-GCCG-CGACCAgCCAc -3'
miRNA:   3'- -AGUGGUaGAAgCGGCuGCUGGU-GGUc -5'
14073 5' -54.9 NC_003521.1 + 217564 0.66 0.978163
Target:  5'- gUCGCCGUCaUgGCgGA-GAUCAUCAGg -3'
miRNA:   3'- -AGUGGUAGaAgCGgCUgCUGGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 210890 0.66 0.975819
Target:  5'- gUCGCC-UCgguggccgUCGCCaggcccuuGACGGCCACgGGu -3'
miRNA:   3'- -AGUGGuAGa-------AGCGG--------CUGCUGGUGgUC- -5'
14073 5' -54.9 NC_003521.1 + 203836 0.66 0.975819
Target:  5'- aCGCCcUCgUCGCgGAUGucGCCGCCGa -3'
miRNA:   3'- aGUGGuAGaAGCGgCUGC--UGGUGGUc -5'
14073 5' -54.9 NC_003521.1 + 63015 0.66 0.978163
Target:  5'- -aGCCggCggCGCCcacGACGcCCACCAGc -3'
miRNA:   3'- agUGGuaGaaGCGG---CUGCuGGUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.