miRNA display CGI


Results 1 - 20 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14073 5' -54.9 NC_003521.1 + 141443 1.08 0.007208
Target:  5'- cUCACCAUCUUCGCCGACGACCACCAGc -3'
miRNA:   3'- -AGUGGUAGAAGCGGCUGCUGGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 223783 0.84 0.231508
Target:  5'- gCGCCGUUacCGCCGugGGCCGCCAGa -3'
miRNA:   3'- aGUGGUAGaaGCGGCugCUGGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 166597 0.79 0.404011
Target:  5'- cCACCGUCacggCGCCGACGGCCugCu- -3'
miRNA:   3'- aGUGGUAGaa--GCGGCUGCUGGugGuc -5'
14073 5' -54.9 NC_003521.1 + 127495 0.79 0.412401
Target:  5'- gUCACCAg--UCGCagGAUGGCCACCAGg -3'
miRNA:   3'- -AGUGGUagaAGCGg-CUGCUGGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 43936 0.78 0.483175
Target:  5'- -gACC-UCUUCGgCGACGAUCACCGGc -3'
miRNA:   3'- agUGGuAGAAGCgGCUGCUGGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 102785 0.76 0.559291
Target:  5'- gCGCgAUgacgCGCCGGCGGCCGCCAGc -3'
miRNA:   3'- aGUGgUAgaa-GCGGCUGCUGGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 201137 0.76 0.569074
Target:  5'- gCACCAUCUggCGCaCGGCGuucauggcuaacACCACCAGc -3'
miRNA:   3'- aGUGGUAGAa-GCG-GCUGC------------UGGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 56019 0.76 0.569074
Target:  5'- cCACCAg--UCGgaGGCGGCCACCAGg -3'
miRNA:   3'- aGUGGUagaAGCggCUGCUGGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 154118 0.76 0.569074
Target:  5'- aUCACCGccUCgucgUCGCCGccGCGGCCcGCCAGa -3'
miRNA:   3'- -AGUGGU--AGa---AGCGGC--UGCUGG-UGGUC- -5'
14073 5' -54.9 NC_003521.1 + 910 0.76 0.569074
Target:  5'- gCACCAUCUggCGCaCGGCGuucauggcuaacACCACCAGc -3'
miRNA:   3'- aGUGGUAGAa-GCG-GCUGC------------UGGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 225525 0.76 0.577914
Target:  5'- gCGCCGUCgcgCGUCGACGAacgcucgUCACCAGg -3'
miRNA:   3'- aGUGGUAGaa-GCGGCUGCU-------GGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 193718 0.76 0.588758
Target:  5'- aCugCGUCUacgaGCUGGCGGCCACCAu -3'
miRNA:   3'- aGugGUAGAag--CGGCUGCUGGUGGUc -5'
14073 5' -54.9 NC_003521.1 + 206126 0.76 0.598649
Target:  5'- gCGCCGUCUUCGCCuACGACgCGCaGGa -3'
miRNA:   3'- aGUGGUAGAAGCGGcUGCUG-GUGgUC- -5'
14073 5' -54.9 NC_003521.1 + 139072 0.75 0.608562
Target:  5'- cCACCAUC--CGCCGcACGACCuGCCGGc -3'
miRNA:   3'- aGUGGUAGaaGCGGC-UGCUGG-UGGUC- -5'
14073 5' -54.9 NC_003521.1 + 127053 0.75 0.635392
Target:  5'- -gGCCGUCgccgUCGUCGACGcggccugucggucaGCCGCCAGc -3'
miRNA:   3'- agUGGUAGa---AGCGGCUGC--------------UGGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 182762 0.75 0.648312
Target:  5'- -uGCCcUCUUCGCCGuaucgggUGGCCGCCAGc -3'
miRNA:   3'- agUGGuAGAAGCGGCu------GCUGGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 223037 0.74 0.668144
Target:  5'- -gGCCAgca-CGCCGACGGCCuCCAGg -3'
miRNA:   3'- agUGGUagaaGCGGCUGCUGGuGGUC- -5'
14073 5' -54.9 NC_003521.1 + 193270 0.74 0.687865
Target:  5'- cUCGCCGUCUUCcCCGcucgacauggACGACCuCCGGg -3'
miRNA:   3'- -AGUGGUAGAAGcGGC----------UGCUGGuGGUC- -5'
14073 5' -54.9 NC_003521.1 + 131260 0.74 0.697664
Target:  5'- aCGCgCAUgCUa-GCCGACGACCACCAc -3'
miRNA:   3'- aGUG-GUA-GAagCGGCUGCUGGUGGUc -5'
14073 5' -54.9 NC_003521.1 + 132562 0.74 0.697664
Target:  5'- cCGCCGUCUUCuCCGGuCGA-CACCAGa -3'
miRNA:   3'- aGUGGUAGAAGcGGCU-GCUgGUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.