miRNA display CGI


Results 41 - 60 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 163184 0.66 0.979443
Target:  5'- aGCGGcAGcgGaCACGGuGgUgGCGGCGGc -3'
miRNA:   3'- gCGUC-UUuaC-GUGCC-UgAgCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 118728 0.66 0.979656
Target:  5'- gCGCGGcaccgGCACGGGCUgcagguugcuggugaGuCGGCGGc -3'
miRNA:   3'- -GCGUCuuua-CGUGCCUGAg--------------C-GCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 84730 0.66 0.975797
Target:  5'- aCGCGGgcAcugccgucgucgucuUGCuCGGGCgcgGCGGCGGc -3'
miRNA:   3'- -GCGUCuuU---------------ACGuGCCUGag-CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 183899 0.66 0.966518
Target:  5'- gGCcGAGGUGCugGaGGCggugcUGCGGCGc -3'
miRNA:   3'- gCGuCUUUACGugC-CUGa----GCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 187876 0.66 0.972237
Target:  5'- gGCGGucaccaccucgGGcgGCACGGGCg-GCGGgGGc -3'
miRNA:   3'- gCGUC-----------UUuaCGUGCCUGagCGCCgCC- -5'
14086 5' -55.4 NC_003521.1 + 36411 0.66 0.969473
Target:  5'- gCGCGGg---GCGUGGAuUUCGCGGuCGGa -3'
miRNA:   3'- -GCGUCuuuaCGUGCCU-GAGCGCC-GCC- -5'
14086 5' -55.4 NC_003521.1 + 123698 0.66 0.974816
Target:  5'- gCGguGGAAgaggagGCgGCGG-CUgaGCGGCGGa -3'
miRNA:   3'- -GCguCUUUa-----CG-UGCCuGAg-CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 50534 0.66 0.977215
Target:  5'- cCGCGGGGuu-CGCGGcaguaUCGCaGGCGGa -3'
miRNA:   3'- -GCGUCUUuacGUGCCug---AGCG-CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 98463 0.66 0.977215
Target:  5'- uGgAGGAGgcgGCgGCGG-C-CGCGGCGGc -3'
miRNA:   3'- gCgUCUUUa--CG-UGCCuGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 184174 0.66 0.969473
Target:  5'- aGCGGgAGGUGCACcGGCcCGUGGUGc -3'
miRNA:   3'- gCGUC-UUUACGUGcCUGaGCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 100075 0.66 0.97329
Target:  5'- gGCAcGGAGgcggGCGCcucgaccgccgacgaGGACUCGC-GCGGg -3'
miRNA:   3'- gCGU-CUUUa---CGUG---------------CCUGAGCGcCGCC- -5'
14086 5' -55.4 NC_003521.1 + 167190 0.66 0.974816
Target:  5'- gGCGGAGGccuucUGCuuGGGCUgGCaGGCGc -3'
miRNA:   3'- gCGUCUUU-----ACGugCCUGAgCG-CCGCc -5'
14086 5' -55.4 NC_003521.1 + 104098 0.66 0.974816
Target:  5'- aCGCGGAAGgcgGCGCGcugccagucCUCGgCGGCGu -3'
miRNA:   3'- -GCGUCUUUa--CGUGCcu-------GAGC-GCCGCc -5'
14086 5' -55.4 NC_003521.1 + 39135 0.66 0.974566
Target:  5'- aGCGGGAugcccguGUGCugccaccgGCGGcgcaGCUCGCGGCc- -3'
miRNA:   3'- gCGUCUU-------UACG--------UGCC----UGAGCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 149058 0.66 0.974816
Target:  5'- uGgGGGGAUGCG-GGACcCGCGG-GGu -3'
miRNA:   3'- gCgUCUUUACGUgCCUGaGCGCCgCC- -5'
14086 5' -55.4 NC_003521.1 + 50418 0.66 0.974816
Target:  5'- aCGCGcuc---CGCGGACUCGCGGUu- -3'
miRNA:   3'- -GCGUcuuuacGUGCCUGAGCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 207750 0.67 0.952689
Target:  5'- uGCAGAAGgccaucuuCAUGGACcCGCugGGCGGc -3'
miRNA:   3'- gCGUCUUUac------GUGCCUGaGCG--CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 129173 0.67 0.952689
Target:  5'- aGCAGAcggcGUGCgGCGGuuuggguUUCGCcGGCGGu -3'
miRNA:   3'- gCGUCUu---UACG-UGCCu------GAGCG-CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 16499 0.67 0.952689
Target:  5'- aCGCuacga-GCACGGGCU-GCGGCGc -3'
miRNA:   3'- -GCGucuuuaCGUGCCUGAgCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 163370 0.67 0.952689
Target:  5'- gGCGGcAGUGuCACGGGCaccaaCGGCGGc -3'
miRNA:   3'- gCGUCuUUAC-GUGCCUGagc--GCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.