Results 21 - 40 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14086 | 5' | -55.4 | NC_003521.1 | + | 239363 | 0.66 | 0.974566 |
Target: 5'- aGCGGGAugcccguGUGCugccaccgGCGGcgcaGCUCGCGGCc- -3' miRNA: 3'- gCGUCUU-------UACG--------UGCC----UGAGCGCCGcc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 102775 | 0.66 | 0.974816 |
Target: 5'- gGCAGcgGcUGCGCGauGACgCGCcGGCGGc -3' miRNA: 3'- gCGUCuuU-ACGUGC--CUGaGCG-CCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 181648 | 0.66 | 0.979443 |
Target: 5'- aGcCAGAAGcgggGCAUGGug-CGCGGgGGa -3' miRNA: 3'- gC-GUCUUUa---CGUGCCugaGCGCCgCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 87374 | 0.66 | 0.966518 |
Target: 5'- gGCcGAGGUGgA-GGACgagGCGGCGGa -3' miRNA: 3'- gCGuCUUUACgUgCCUGag-CGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 30244 | 0.66 | 0.966518 |
Target: 5'- uGCAGGuccGCGCGGuuGC-CGUGGCGc -3' miRNA: 3'- gCGUCUuuaCGUGCC--UGaGCGCCGCc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 168530 | 0.66 | 0.969473 |
Target: 5'- aGCAG----GCugGcGGCcagCGCGGCGGc -3' miRNA: 3'- gCGUCuuuaCGugC-CUGa--GCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 46444 | 0.66 | 0.969473 |
Target: 5'- gGCGGGGcUGCGgGGGCUgGuCGGCc- -3' miRNA: 3'- gCGUCUUuACGUgCCUGAgC-GCCGcc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 187584 | 0.66 | 0.979227 |
Target: 5'- cCGCGGggGcuucgccgGCggucgcuucgcccGCGGACUCcCGGCGa -3' miRNA: 3'- -GCGUCuuUa-------CG-------------UGCCUGAGcGCCGCc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 35782 | 0.66 | 0.977215 |
Target: 5'- gCGCAGAcggacgaaacgGAUcCAuCGGGCgUCGCGGCa- -3' miRNA: 3'- -GCGUCU-----------UUAcGU-GCCUG-AGCGCCGcc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 24231 | 0.66 | 0.969473 |
Target: 5'- aGCGGGuuggGCAgCGGGCggUCG-GGCGGu -3' miRNA: 3'- gCGUCUuua-CGU-GCCUG--AGCgCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 126291 | 0.66 | 0.966518 |
Target: 5'- aGCGGAAAUcgAUGGuGCcCGUGGCGGc -3' miRNA: 3'- gCGUCUUUAcgUGCC-UGaGCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 101694 | 0.66 | 0.974816 |
Target: 5'- gGCAGAucuuguccUGUACGcucagcacGAUgCGCGGCGGg -3' miRNA: 3'- gCGUCUuu------ACGUGC--------CUGaGCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 110010 | 0.66 | 0.974816 |
Target: 5'- gGCGGGAgauGUGCACccggcucucguGGGCgCGCuGCGGu -3' miRNA: 3'- gCGUCUU---UACGUG-----------CCUGaGCGcCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 24434 | 0.66 | 0.974816 |
Target: 5'- gCGCAGGg--GCcgGCGGGCUCGgaacaggucCGcGCGGa -3' miRNA: 3'- -GCGUCUuuaCG--UGCCUGAGC---------GC-CGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 27853 | 0.66 | 0.966518 |
Target: 5'- cCGCGGucucguAAcgGCACGGAggacCUCGaccgcauggaGGCGGg -3' miRNA: 3'- -GCGUC------UUuaCGUGCCU----GAGCg---------CCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 226354 | 0.66 | 0.966518 |
Target: 5'- cCGCGGGuagcGcCGCGGGa--GCGGCGGc -3' miRNA: 3'- -GCGUCUuua-C-GUGCCUgagCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 56273 | 0.66 | 0.969473 |
Target: 5'- gGCAGAGGU---UGGACUCGCaGGCc- -3' miRNA: 3'- gCGUCUUUAcguGCCUGAGCG-CCGcc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 117932 | 0.66 | 0.974816 |
Target: 5'- gCGCAGGAcgGgGgaggaGGAgagcaucaUCGCGGCGGc -3' miRNA: 3'- -GCGUCUUuaCgUg----CCUg-------AGCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 226125 | 0.66 | 0.976277 |
Target: 5'- -aCAGGuugGCGCGGAUgccccaccaccaGCGGCGGc -3' miRNA: 3'- gcGUCUuuaCGUGCCUGag----------CGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 152007 | 0.66 | 0.977215 |
Target: 5'- aGCgAGAAGUGCAucagguuguCGGGCUucaccaggcCGCaGCGGu -3' miRNA: 3'- gCG-UCUUUACGU---------GCCUGA---------GCGcCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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