miRNA display CGI


Results 21 - 40 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 92 0.73 0.725457
Target:  5'- cCGCGGgcGUGCAgGGAggcCgaaGCGGCGGc -3'
miRNA:   3'- -GCGUCuuUACGUgCCU---Gag-CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 240641 0.73 0.725457
Target:  5'- cCGCGGgcGUGCAgGGAggcCgaaGCGGCGGc -3'
miRNA:   3'- -GCGUCuuUACGUgCCU---Gag-CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 165871 0.73 0.734942
Target:  5'- -cCAGcgGUGCACGuGCUCggGCGGCGGg -3'
miRNA:   3'- gcGUCuuUACGUGCcUGAG--CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 40706 0.73 0.744344
Target:  5'- cCGguGAGAUGCACcacaUCGCGGCGc -3'
miRNA:   3'- -GCguCUUUACGUGccugAGCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 91928 0.72 0.752729
Target:  5'- gGCGGcGAUGCgguggacccggcgGCGGACccCGUGGCGGc -3'
miRNA:   3'- gCGUCuUUACG-------------UGCCUGa-GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 78525 0.72 0.753655
Target:  5'- aCGCGGAuuc-CGCGGACUCcCGGCGu -3'
miRNA:   3'- -GCGUCUuuacGUGCCUGAGcGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 110322 0.72 0.753655
Target:  5'- cCGCAGGGccaucAUGaCGCGGccgcGCUCGCGGUGu -3'
miRNA:   3'- -GCGUCUU-----UAC-GUGCC----UGAGCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 37530 0.72 0.780957
Target:  5'- aCGUccuGGggGUGgGCagcgGGGgUCGCGGCGGa -3'
miRNA:   3'- -GCG---UCuuUACgUG----CCUgAGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 211713 0.72 0.780957
Target:  5'- gCGCAGc---GCGCGGAUggUGCGGCGa -3'
miRNA:   3'- -GCGUCuuuaCGUGCCUGa-GCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 186745 0.72 0.788939
Target:  5'- gGC-GAGcccAUGCugGGGCUCGgcggcauCGGCGGa -3'
miRNA:   3'- gCGuCUU---UACGugCCUGAGC-------GCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 168424 0.72 0.78982
Target:  5'- gGCGGGcg-GCA-GGGC-CGCGGCGGc -3'
miRNA:   3'- gCGUCUuuaCGUgCCUGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 99713 0.72 0.78982
Target:  5'- gCGCAGAAGcUGCGCGGGC-CGCaGUa- -3'
miRNA:   3'- -GCGUCUUU-ACGUGCCUGaGCGcCGcc -5'
14086 5' -55.4 NC_003521.1 + 113854 0.72 0.79855
Target:  5'- gGCGGccggcgacGAcgGCGCGGGUUcCGCGGCGGc -3'
miRNA:   3'- gCGUC--------UUuaCGUGCCUGA-GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 88034 0.72 0.79855
Target:  5'- uGCAGcuugagcucguuGAGcGCGCGGAUgaggUCGCGGUGGu -3'
miRNA:   3'- gCGUC------------UUUaCGUGCCUG----AGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 173016 0.72 0.79855
Target:  5'- aCGCGGAugcuuuggaGCACGcGCUCGCcGGUGGg -3'
miRNA:   3'- -GCGUCUuua------CGUGCcUGAGCG-CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 147389 0.72 0.79855
Target:  5'- -aCGGggGUGCgagaugGCGGAUcgCGUGGCGGu -3'
miRNA:   3'- gcGUCuuUACG------UGCCUGa-GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 150643 0.71 0.807141
Target:  5'- gGCGGGGgcGUGCGCGacgaaggcGGCUCuccgGCGGCGGc -3'
miRNA:   3'- gCGUCUU--UACGUGC--------CUGAG----CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 192039 0.71 0.807141
Target:  5'- cCGCcGgcGUGCGCGGcagacgcgGCgucCGCGGCGGu -3'
miRNA:   3'- -GCGuCuuUACGUGCC--------UGa--GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 97609 0.71 0.814747
Target:  5'- aGCAGGugcAGUGCACGucgucgugcucaGGCucgacguUCGCGGCGGc -3'
miRNA:   3'- gCGUCU---UUACGUGC------------CUG-------AGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 6383 0.71 0.815584
Target:  5'- uCGCGGAGggGCGCcgcaGCUacCGCGGCGGc -3'
miRNA:   3'- -GCGUCUUuaCGUGcc--UGA--GCGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.