Results 1 - 20 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14086 | 5' | -55.4 | NC_003521.1 | + | 136858 | 1.12 | 0.003919 |
Target: 5'- aCGCAGAAAUGCACGGACUCGCGGCGGg -3' miRNA: 3'- -GCGUCUUUACGUGCCUGAGCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 34605 | 0.81 | 0.30662 |
Target: 5'- gCGCAGAuggacucGUGCACGGGgUCGCaGCGGa -3' miRNA: 3'- -GCGUCUu------UACGUGCCUgAGCGcCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 235581 | 0.78 | 0.446777 |
Target: 5'- cCGCGGGAcGUGCgggaggacgagagGCGGACUCG-GGCGGa -3' miRNA: 3'- -GCGUCUU-UACG-------------UGCCUGAGCgCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 43146 | 0.76 | 0.578644 |
Target: 5'- gCGUGGAGGUGCACGcGCUgGUGGCGc -3' miRNA: 3'- -GCGUCUUUACGUGCcUGAgCGCCGCc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 131085 | 0.75 | 0.598254 |
Target: 5'- cCGCGGcuc-GCGCGGGCUCcggaCGGCGGg -3' miRNA: 3'- -GCGUCuuuaCGUGCCUGAGc---GCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 239440 | 0.74 | 0.666278 |
Target: 5'- cCGCAGca--GCGCGGGCUCggggacaGCGGUGGc -3' miRNA: 3'- -GCGUCuuuaCGUGCCUGAG-------CGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 39212 | 0.74 | 0.666278 |
Target: 5'- cCGCAGca--GCGCGGGCUCggggacaGCGGUGGc -3' miRNA: 3'- -GCGUCuuuaCGUGCCUGAG-------CGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 157028 | 0.74 | 0.667261 |
Target: 5'- aGCAGGuuucggggGCGCGGuCggaggagCGCGGCGGg -3' miRNA: 3'- gCGUCUuua-----CGUGCCuGa------GCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 85859 | 0.74 | 0.667261 |
Target: 5'- aCGCAGAuGAUGCAgGGcaccaggcGCUCGCGGUa- -3' miRNA: 3'- -GCGUCU-UUACGUgCC--------UGAGCGCCGcc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 137301 | 0.74 | 0.677073 |
Target: 5'- uGCGGGug-GCGCGGcuGCUgCGCGGCGa -3' miRNA: 3'- gCGUCUuuaCGUGCC--UGA-GCGCCGCc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 124440 | 0.74 | 0.68685 |
Target: 5'- gGCgAGAcGUGguUGGGC-CGCGGCGGc -3' miRNA: 3'- gCG-UCUuUACguGCCUGaGCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 145570 | 0.74 | 0.68685 |
Target: 5'- uGCAGAAcGUGCugcgGCGGcACgaCGCGGCGGc -3' miRNA: 3'- gCGUCUU-UACG----UGCC-UGa-GCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 18446 | 0.74 | 0.696585 |
Target: 5'- gCGCGGccuGUGCcgcuucgaccGCGGGCUgCGCGGCGa -3' miRNA: 3'- -GCGUCuu-UACG----------UGCCUGA-GCGCCGCc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 116877 | 0.74 | 0.696585 |
Target: 5'- gCGCAGug--GCGCGG-CU-GCGGCGGc -3' miRNA: 3'- -GCGUCuuuaCGUGCCuGAgCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 78608 | 0.73 | 0.70627 |
Target: 5'- aGCGGAGAgGCACcGACUgCGCGGCu- -3' miRNA: 3'- gCGUCUUUaCGUGcCUGA-GCGCCGcc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 62233 | 0.73 | 0.70627 |
Target: 5'- uGCAGGAggGCGCccggcuGGACgCGCGGCuGGa -3' miRNA: 3'- gCGUCUUuaCGUG------CCUGaGCGCCG-CC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 155647 | 0.73 | 0.70627 |
Target: 5'- aGCAGAAgcgccGUGCugGG--UgGCGGCGGa -3' miRNA: 3'- gCGUCUU-----UACGugCCugAgCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 223337 | 0.73 | 0.715897 |
Target: 5'- cCGCAGAuaGGUGCcccaGGcCUCgGCGGCGGc -3' miRNA: 3'- -GCGUCU--UUACGug--CCuGAG-CGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 133359 | 0.73 | 0.715897 |
Target: 5'- aCGUGGAGAUcaGCACGGuccgccggcACagCGCGGCGGu -3' miRNA: 3'- -GCGUCUUUA--CGUGCC---------UGa-GCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 240641 | 0.73 | 0.725457 |
Target: 5'- cCGCGGgcGUGCAgGGAggcCgaaGCGGCGGc -3' miRNA: 3'- -GCGUCuuUACGUgCCU---Gag-CGCCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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