miRNA display CGI


Results 1 - 20 of 226 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 92 0.73 0.725457
Target:  5'- cCGCGGgcGUGCAgGGAggcCgaaGCGGCGGc -3'
miRNA:   3'- -GCGUCuuUACGUgCCU---Gag-CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 5636 0.67 0.956457
Target:  5'- uCGCGGGA----ACGGACccacaUgGCGGCGGa -3'
miRNA:   3'- -GCGUCUUuacgUGCCUG-----AgCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 6073 0.69 0.908949
Target:  5'- --aGGGAAUGCgACGGcCggUGCGGCGGc -3'
miRNA:   3'- gcgUCUUUACG-UGCCuGa-GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 6383 0.71 0.815584
Target:  5'- uCGCGGAGggGCGCcgcaGCUacCGCGGCGGc -3'
miRNA:   3'- -GCGUCUUuaCGUGcc--UGA--GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 7955 0.7 0.869963
Target:  5'- -cCAGAucgcCGCGGugUCGCGGcCGGg -3'
miRNA:   3'- gcGUCUuuacGUGCCugAGCGCC-GCC- -5'
14086 5' -55.4 NC_003521.1 + 11565 0.67 0.948708
Target:  5'- gCGCcGucGUGCGcCGGACUCuGCGG-GGu -3'
miRNA:   3'- -GCGuCuuUACGU-GCCUGAG-CGCCgCC- -5'
14086 5' -55.4 NC_003521.1 + 16499 0.67 0.952689
Target:  5'- aCGCuacga-GCACGGGCU-GCGGCGc -3'
miRNA:   3'- -GCGucuuuaCGUGCCUGAgCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 16708 0.7 0.847736
Target:  5'- gGCAGAc--GCGCGuGAUgCGCGGCGa -3'
miRNA:   3'- gCGUCUuuaCGUGC-CUGaGCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 16991 0.67 0.963367
Target:  5'- cCGCAGGGAcaGCAgGcGCcCGCGGUGGc -3'
miRNA:   3'- -GCGUCUUUa-CGUgCcUGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 18446 0.74 0.696585
Target:  5'- gCGCGGccuGUGCcgcuucgaccGCGGGCUgCGCGGCGa -3'
miRNA:   3'- -GCGUCuu-UACG----------UGCCUGA-GCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 18648 0.66 0.977215
Target:  5'- gCGUGGGGccGCACGGACcUGCuGGCcacGGg -3'
miRNA:   3'- -GCGUCUUuaCGUGCCUGaGCG-CCG---CC- -5'
14086 5' -55.4 NC_003521.1 + 19955 0.7 0.862746
Target:  5'- uGguGAGGUGgC-CGGGCUgGCGGUGa -3'
miRNA:   3'- gCguCUUUAC-GuGCCUGAgCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 21948 0.7 0.869963
Target:  5'- gGCuGGA--GCAgUGGGCgagCGCGGCGGg -3'
miRNA:   3'- gCGuCUUuaCGU-GCCUGa--GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 24231 0.66 0.969473
Target:  5'- aGCGGGuuggGCAgCGGGCggUCG-GGCGGu -3'
miRNA:   3'- gCGUCUuua-CGU-GCCUG--AGCgCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 24434 0.66 0.974816
Target:  5'- gCGCAGGg--GCcgGCGGGCUCGgaacaggucCGcGCGGa -3'
miRNA:   3'- -GCGUCUuuaCG--UGCCUGAGC---------GC-CGCC- -5'
14086 5' -55.4 NC_003521.1 + 27087 0.67 0.956457
Target:  5'- gCGCAGGcAGUGCA-GGcuCUCGaCGGCGc -3'
miRNA:   3'- -GCGUCU-UUACGUgCCu-GAGC-GCCGCc -5'
14086 5' -55.4 NC_003521.1 + 27244 0.71 0.839955
Target:  5'- gGC-GAGA-GCACGGGCUCGCcgaugauGCGGc -3'
miRNA:   3'- gCGuCUUUaCGUGCCUGAGCGc------CGCC- -5'
14086 5' -55.4 NC_003521.1 + 27853 0.66 0.966518
Target:  5'- cCGCGGucucguAAcgGCACGGAggacCUCGaccgcauggaGGCGGg -3'
miRNA:   3'- -GCGUC------UUuaCGUGCCU----GAGCg---------CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 29841 0.67 0.956457
Target:  5'- uGCAGA--UGCACGGACUguucaCGCc-CGGg -3'
miRNA:   3'- gCGUCUuuACGUGCCUGA-----GCGccGCC- -5'
14086 5' -55.4 NC_003521.1 + 30244 0.66 0.966518
Target:  5'- uGCAGGuccGCGCGGuuGC-CGUGGCGc -3'
miRNA:   3'- gCGUCUuuaCGUGCC--UGaGCGCCGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.