miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 101485 0.66 0.969473
Target:  5'- gCGCGuGAGGUGCuCGaGCa-GCGGCGGc -3'
miRNA:   3'- -GCGU-CUUUACGuGCcUGagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 115438 0.66 0.974816
Target:  5'- gCGCGGggGUG-ACGGugguugUGCGGaCGGu -3'
miRNA:   3'- -GCGUCuuUACgUGCCuga---GCGCC-GCC- -5'
14086 5' -55.4 NC_003521.1 + 30244 0.66 0.966518
Target:  5'- uGCAGGuccGCGCGGuuGC-CGUGGCGc -3'
miRNA:   3'- gCGUCUuuaCGUGCC--UGaGCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 101694 0.66 0.974816
Target:  5'- gGCAGAucuuguccUGUACGcucagcacGAUgCGCGGCGGg -3'
miRNA:   3'- gCGUCUuu------ACGUGC--------CUGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 123169 0.66 0.979443
Target:  5'- uGCuGAGGUG-GCGG-Cg-GCGGCGGg -3'
miRNA:   3'- gCGuCUUUACgUGCCuGagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 24434 0.66 0.974816
Target:  5'- gCGCAGGg--GCcgGCGGGCUCGgaacaggucCGcGCGGa -3'
miRNA:   3'- -GCGUCUuuaCG--UGCCUGAGC---------GC-CGCC- -5'
14086 5' -55.4 NC_003521.1 + 24231 0.66 0.969473
Target:  5'- aGCGGGuuggGCAgCGGGCggUCG-GGCGGu -3'
miRNA:   3'- gCGUCUuua-CGU-GCCUG--AGCgCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 46444 0.66 0.969473
Target:  5'- gGCGGGGcUGCGgGGGCUgGuCGGCc- -3'
miRNA:   3'- gCGUCUUuACGUgCCUGAgC-GCCGcc -5'
14086 5' -55.4 NC_003521.1 + 45516 0.66 0.972237
Target:  5'- cCGUcGAGccGCAUGGACUUG-GaGCGGg -3'
miRNA:   3'- -GCGuCUUuaCGUGCCUGAGCgC-CGCC- -5'
14086 5' -55.4 NC_003521.1 + 193130 0.66 0.969473
Target:  5'- aGuCGGAAGUGCAgaGGggagGCUCaUGGCGGg -3'
miRNA:   3'- gC-GUCUUUACGUg-CC----UGAGcGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 73125 0.66 0.974816
Target:  5'- -aCGGAGGUGCugcacgGCGGGggCaGCGGCGGc -3'
miRNA:   3'- gcGUCUUUACG------UGCCUgaG-CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 239363 0.66 0.974566
Target:  5'- aGCGGGAugcccguGUGCugccaccgGCGGcgcaGCUCGCGGCc- -3'
miRNA:   3'- gCGUCUU-------UACG--------UGCC----UGAGCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 168530 0.66 0.969473
Target:  5'- aGCAG----GCugGcGGCcagCGCGGCGGc -3'
miRNA:   3'- gCGUCuuuaCGugC-CUGa--GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 226354 0.66 0.966518
Target:  5'- cCGCGGGuagcGcCGCGGGa--GCGGCGGc -3'
miRNA:   3'- -GCGUCUuua-C-GUGCCUgagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 110010 0.66 0.974816
Target:  5'- gGCGGGAgauGUGCACccggcucucguGGGCgCGCuGCGGu -3'
miRNA:   3'- gCGUCUU---UACGUG-----------CCUGaGCGcCGCC- -5'
14086 5' -55.4 NC_003521.1 + 87374 0.66 0.966518
Target:  5'- gGCcGAGGUGgA-GGACgagGCGGCGGa -3'
miRNA:   3'- gCGuCUUUACgUgCCUGag-CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 27853 0.66 0.966518
Target:  5'- cCGCGGucucguAAcgGCACGGAggacCUCGaccgcauggaGGCGGg -3'
miRNA:   3'- -GCGUC------UUuaCGUGCCU----GAGCg---------CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 117932 0.66 0.974816
Target:  5'- gCGCAGGAcgGgGgaggaGGAgagcaucaUCGCGGCGGc -3'
miRNA:   3'- -GCGUCUUuaCgUg----CCUg-------AGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 102775 0.66 0.974816
Target:  5'- gGCAGcgGcUGCGCGauGACgCGCcGGCGGc -3'
miRNA:   3'- gCGUCuuU-ACGUGC--CUGaGCG-CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 187876 0.66 0.972237
Target:  5'- gGCGGucaccaccucgGGcgGCACGGGCg-GCGGgGGc -3'
miRNA:   3'- gCGUC-----------UUuaCGUGCCUGagCGCCgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.