miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 150643 0.71 0.807141
Target:  5'- gGCGGGGgcGUGCGCGacgaaggcGGCUCuccgGCGGCGGc -3'
miRNA:   3'- gCGUCUU--UACGUGC--------CUGAG----CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 223337 0.73 0.715897
Target:  5'- cCGCAGAuaGGUGCcccaGGcCUCgGCGGCGGc -3'
miRNA:   3'- -GCGUCU--UUACGug--CCuGAG-CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 92 0.73 0.725457
Target:  5'- cCGCGGgcGUGCAgGGAggcCgaaGCGGCGGc -3'
miRNA:   3'- -GCGUCuuUACGUgCCU---Gag-CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 240641 0.73 0.725457
Target:  5'- cCGCGGgcGUGCAgGGAggcCgaaGCGGCGGc -3'
miRNA:   3'- -GCGUCuuUACGUgCCU---Gag-CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 165871 0.73 0.734942
Target:  5'- -cCAGcgGUGCACGuGCUCggGCGGCGGg -3'
miRNA:   3'- gcGUCuuUACGUGCcUGAG--CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 40706 0.73 0.744344
Target:  5'- cCGguGAGAUGCACcacaUCGCGGCGc -3'
miRNA:   3'- -GCguCUUUACGUGccugAGCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 91928 0.72 0.752729
Target:  5'- gGCGGcGAUGCgguggacccggcgGCGGACccCGUGGCGGc -3'
miRNA:   3'- gCGUCuUUACG-------------UGCCUGa-GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 168424 0.72 0.78982
Target:  5'- gGCGGGcg-GCA-GGGC-CGCGGCGGc -3'
miRNA:   3'- gCGUCUuuaCGUgCCUGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 88034 0.72 0.79855
Target:  5'- uGCAGcuugagcucguuGAGcGCGCGGAUgaggUCGCGGUGGu -3'
miRNA:   3'- gCGUC------------UUUaCGUGCCUG----AGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 133359 0.73 0.715897
Target:  5'- aCGUGGAGAUcaGCACGGuccgccggcACagCGCGGCGGu -3'
miRNA:   3'- -GCGUCUUUA--CGUGCC---------UGa-GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 62233 0.73 0.70627
Target:  5'- uGCAGGAggGCGCccggcuGGACgCGCGGCuGGa -3'
miRNA:   3'- gCGUCUUuaCGUG------CCUGaGCGCCG-CC- -5'
14086 5' -55.4 NC_003521.1 + 155647 0.73 0.70627
Target:  5'- aGCAGAAgcgccGUGCugGG--UgGCGGCGGa -3'
miRNA:   3'- gCGUCUU-----UACGugCCugAgCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 235581 0.78 0.446777
Target:  5'- cCGCGGGAcGUGCgggaggacgagagGCGGACUCG-GGCGGa -3'
miRNA:   3'- -GCGUCUU-UACG-------------UGCCUGAGCgCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 43146 0.76 0.578644
Target:  5'- gCGUGGAGGUGCACGcGCUgGUGGCGc -3'
miRNA:   3'- -GCGUCUUUACGUGCcUGAgCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 131085 0.75 0.598254
Target:  5'- cCGCGGcuc-GCGCGGGCUCcggaCGGCGGg -3'
miRNA:   3'- -GCGUCuuuaCGUGCCUGAGc---GCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 239440 0.74 0.666278
Target:  5'- cCGCAGca--GCGCGGGCUCggggacaGCGGUGGc -3'
miRNA:   3'- -GCGUCuuuaCGUGCCUGAG-------CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 137301 0.74 0.677073
Target:  5'- uGCGGGug-GCGCGGcuGCUgCGCGGCGa -3'
miRNA:   3'- gCGUCUuuaCGUGCC--UGA-GCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 124440 0.74 0.68685
Target:  5'- gGCgAGAcGUGguUGGGC-CGCGGCGGc -3'
miRNA:   3'- gCG-UCUuUACguGCCUGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 145570 0.74 0.68685
Target:  5'- uGCAGAAcGUGCugcgGCGGcACgaCGCGGCGGc -3'
miRNA:   3'- gCGUCUU-UACG----UGCC-UGa-GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 116877 0.74 0.696585
Target:  5'- gCGCAGug--GCGCGG-CU-GCGGCGGc -3'
miRNA:   3'- -GCGUCuuuaCGUGCCuGAgCGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.