miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 136858 1.12 0.003919
Target:  5'- aCGCAGAAAUGCACGGACUCGCGGCGGg -3'
miRNA:   3'- -GCGUCUUUACGUGCCUGAGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 164202 0.71 0.815584
Target:  5'- gGCGGAAcgGCG-GGGCg-GCGGUGGu -3'
miRNA:   3'- gCGUCUUuaCGUgCCUGagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 195170 0.71 0.831998
Target:  5'- aGCGGguGUGCGcCGGACcCcgcggagccgGCGGCGGu -3'
miRNA:   3'- gCGUCuuUACGU-GCCUGaG----------CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 123169 0.66 0.979443
Target:  5'- uGCuGAGGUG-GCGG-Cg-GCGGCGGg -3'
miRNA:   3'- gCGuCUUUACgUGCCuGagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 18446 0.74 0.696585
Target:  5'- gCGCGGccuGUGCcgcuucgaccGCGGGCUgCGCGGCGa -3'
miRNA:   3'- -GCGUCuu-UACG----------UGCCUGA-GCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 78608 0.73 0.70627
Target:  5'- aGCGGAGAgGCACcGACUgCGCGGCu- -3'
miRNA:   3'- gCGUCUUUaCGUGcCUGA-GCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 78525 0.72 0.753655
Target:  5'- aCGCGGAuuc-CGCGGACUCcCGGCGu -3'
miRNA:   3'- -GCGUCUuuacGUGCCUGAGcGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 110322 0.72 0.753655
Target:  5'- cCGCAGGGccaucAUGaCGCGGccgcGCUCGCGGUGu -3'
miRNA:   3'- -GCGUCUU-----UAC-GUGCC----UGAGCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 186745 0.72 0.788939
Target:  5'- gGC-GAGcccAUGCugGGGCUCGgcggcauCGGCGGa -3'
miRNA:   3'- gCGuCUU---UACGugCCUGAGC-------GCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 97609 0.71 0.814747
Target:  5'- aGCAGGugcAGUGCACGucgucgugcucaGGCucgacguUCGCGGCGGc -3'
miRNA:   3'- gCGUCU---UUACGUGC------------CUG-------AGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 173016 0.72 0.79855
Target:  5'- aCGCGGAugcuuuggaGCACGcGCUCGCcGGUGGg -3'
miRNA:   3'- -GCGUCUuua------CGUGCcUGAGCG-CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 211713 0.72 0.780957
Target:  5'- gCGCAGc---GCGCGGAUggUGCGGCGa -3'
miRNA:   3'- -GCGUCuuuaCGUGCCUGa-GCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 39212 0.74 0.666278
Target:  5'- cCGCAGca--GCGCGGGCUCggggacaGCGGUGGc -3'
miRNA:   3'- -GCGUCuuuaCGUGCCUGAG-------CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 113854 0.72 0.79855
Target:  5'- gGCGGccggcgacGAcgGCGCGGGUUcCGCGGCGGc -3'
miRNA:   3'- gCGUC--------UUuaCGUGCCUGA-GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 157028 0.74 0.667261
Target:  5'- aGCAGGuuucggggGCGCGGuCggaggagCGCGGCGGg -3'
miRNA:   3'- gCGUCUuua-----CGUGCCuGa------GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 37530 0.72 0.780957
Target:  5'- aCGUccuGGggGUGgGCagcgGGGgUCGCGGCGGa -3'
miRNA:   3'- -GCG---UCuuUACgUG----CCUgAGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 147389 0.72 0.79855
Target:  5'- -aCGGggGUGCgagaugGCGGAUcgCGUGGCGGu -3'
miRNA:   3'- gcGUCuuUACG------UGCCUGa-GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 111240 0.71 0.831998
Target:  5'- uCGCGGccg-GCGCGG---CGCGGCGGa -3'
miRNA:   3'- -GCGUCuuuaCGUGCCugaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 85859 0.74 0.667261
Target:  5'- aCGCAGAuGAUGCAgGGcaccaggcGCUCGCGGUa- -3'
miRNA:   3'- -GCGUCU-UUACGUgCC--------UGAGCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 40414 0.73 0.725457
Target:  5'- cCGCGGgcGUGCAgGGAggcCgaaGCGGCGGc -3'
miRNA:   3'- -GCGUCuuUACGUgCCU---Gag-CGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.