miRNA display CGI


Results 21 - 40 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 31161 0.7 0.862746
Target:  5'- gCGCAgcGAGAUGCAacgguaguCGGGgaUGCGGUGGa -3'
miRNA:   3'- -GCGU--CUUUACGU--------GCCUgaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 31576 0.66 0.977215
Target:  5'- uCGCGGGAcacgcugGCACGGAUacgggagaugUCGUccaccgucagguGGCGGa -3'
miRNA:   3'- -GCGUCUUua-----CGUGCCUG----------AGCG------------CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 31711 0.67 0.952689
Target:  5'- gGCAGcaugugcgcGUGCugGGACgcCGCGGCc- -3'
miRNA:   3'- gCGUCuu-------UACGugCCUGa-GCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 32130 0.7 0.862746
Target:  5'- gGCAGGuagcggGCGCGGuGCaccaaGCGGCGGa -3'
miRNA:   3'- gCGUCUuua---CGUGCC-UGag---CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 34511 0.67 0.948708
Target:  5'- gCGCAGGuaGcgGcCGCGGGCcgagacgCGCGaGCGGc -3'
miRNA:   3'- -GCGUCU--UuaC-GUGCCUGa------GCGC-CGCC- -5'
14086 5' -55.4 NC_003521.1 + 34605 0.81 0.30662
Target:  5'- gCGCAGAuggacucGUGCACGGGgUCGCaGCGGa -3'
miRNA:   3'- -GCGUCUu------UACGUGCCUgAGCGcCGCC- -5'
14086 5' -55.4 NC_003521.1 + 34926 0.68 0.930601
Target:  5'- aGCAGuAGcgGCGCaGACccucguagUCGCGGCGc -3'
miRNA:   3'- gCGUC-UUuaCGUGcCUG--------AGCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 35087 0.69 0.896802
Target:  5'- gCGCucGAcAUGC-CGGAUUCGaGGCGGc -3'
miRNA:   3'- -GCGu-CUuUACGuGCCUGAGCgCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 35782 0.66 0.977215
Target:  5'- gCGCAGAcggacgaaacgGAUcCAuCGGGCgUCGCGGCa- -3'
miRNA:   3'- -GCGUCU-----------UUAcGU-GCCUG-AGCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 36411 0.66 0.969473
Target:  5'- gCGCGGg---GCGUGGAuUUCGCGGuCGGa -3'
miRNA:   3'- -GCGUCuuuaCGUGCCU-GAGCGCC-GCC- -5'
14086 5' -55.4 NC_003521.1 + 36800 0.67 0.952689
Target:  5'- uGCGGAGccGCucgcggacgGCGGACUCG-GGCa- -3'
miRNA:   3'- gCGUCUUuaCG---------UGCCUGAGCgCCGcc -5'
14086 5' -55.4 NC_003521.1 + 36970 0.69 0.911273
Target:  5'- aGCGGAGcggGUGCucggcggcgacauccGCgacgaGGGCgUCGCGGCGGa -3'
miRNA:   3'- gCGUCUU---UACG---------------UG-----CCUG-AGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 37430 0.7 0.867818
Target:  5'- gCGCGGcgccgagccucugaAGGUGaCGCuguGGGCUCGCGcGCGGg -3'
miRNA:   3'- -GCGUC--------------UUUAC-GUG---CCUGAGCGC-CGCC- -5'
14086 5' -55.4 NC_003521.1 + 37530 0.72 0.780957
Target:  5'- aCGUccuGGggGUGgGCagcgGGGgUCGCGGCGGa -3'
miRNA:   3'- -GCG---UCuuUACgUG----CCUgAGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 38226 0.7 0.883125
Target:  5'- gCGCAGGGcgGCcucggcgggcgggGCGGAgaCGCGGCccaGGg -3'
miRNA:   3'- -GCGUCUUuaCG-------------UGCCUgaGCGCCG---CC- -5'
14086 5' -55.4 NC_003521.1 + 38520 0.7 0.876982
Target:  5'- aGCAGAAGUcggGCcgGCGGAgCUCGacagaGGUGGg -3'
miRNA:   3'- gCGUCUUUA---CG--UGCCU-GAGCg----CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 39135 0.66 0.974566
Target:  5'- aGCGGGAugcccguGUGCugccaccgGCGGcgcaGCUCGCGGCc- -3'
miRNA:   3'- gCGUCUU-------UACG--------UGCC----UGAGCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 39212 0.74 0.666278
Target:  5'- cCGCAGca--GCGCGGGCUCggggacaGCGGUGGc -3'
miRNA:   3'- -GCGUCuuuaCGUGCCUGAG-------CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 40029 0.66 0.977215
Target:  5'- aGCGGAAAgucgGUGUGGA-UCGCGGaCGGc -3'
miRNA:   3'- gCGUCUUUa---CGUGCCUgAGCGCC-GCC- -5'
14086 5' -55.4 NC_003521.1 + 40414 0.73 0.725457
Target:  5'- cCGCGGgcGUGCAgGGAggcCgaaGCGGCGGc -3'
miRNA:   3'- -GCGUCuuUACGUgCCU---Gag-CGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.