miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 240641 0.73 0.725457
Target:  5'- cCGCGGgcGUGCAgGGAggcCgaaGCGGCGGc -3'
miRNA:   3'- -GCGUCuuUACGUgCCU---Gag-CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 240257 0.66 0.977215
Target:  5'- aGCGGAAAgucgGUGUGGA-UCGCGGaCGGc -3'
miRNA:   3'- gCGUCUUUa---CGUGCCUgAGCGCC-GCC- -5'
14086 5' -55.4 NC_003521.1 + 240144 0.68 0.925521
Target:  5'- gCGCGGAAA-GCGCuGGCUCaUGGCGu -3'
miRNA:   3'- -GCGUCUUUaCGUGcCUGAGcGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 239860 0.68 0.930601
Target:  5'- gCGCGGAAGcccauuccucUGCAgCGGACcacguuccagUCGCaGCGGc -3'
miRNA:   3'- -GCGUCUUU----------ACGU-GCCUG----------AGCGcCGCC- -5'
14086 5' -55.4 NC_003521.1 + 239440 0.74 0.666278
Target:  5'- cCGCAGca--GCGCGGGCUCggggacaGCGGUGGc -3'
miRNA:   3'- -GCGUCuuuaCGUGCCUGAG-------CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 239363 0.66 0.974566
Target:  5'- aGCGGGAugcccguGUGCugccaccgGCGGcgcaGCUCGCGGCc- -3'
miRNA:   3'- gCGUCUU-------UACG--------UGCC----UGAGCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 238747 0.7 0.876982
Target:  5'- aGCAGAAGUcggGCcgGCGGAgCUCGacagaGGUGGg -3'
miRNA:   3'- gCGUCUUUA---CG--UGCCU-GAGCg----CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 238454 0.7 0.883125
Target:  5'- gCGCAGGGcgGCcucggcgggcgggGCGGAgaCGCGGCccaGGg -3'
miRNA:   3'- -GCGUCUUuaCG-------------UGCCUgaGCGCCG---CC- -5'
14086 5' -55.4 NC_003521.1 + 236136 0.69 0.902984
Target:  5'- aCGCGGggGUuCACgGGACUugagcaagaUGCGGCGu -3'
miRNA:   3'- -GCGUCuuUAcGUG-CCUGA---------GCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 235581 0.78 0.446777
Target:  5'- cCGCGGGAcGUGCgggaggacgagagGCGGACUCG-GGCGGa -3'
miRNA:   3'- -GCGUCUU-UACG-------------UGCCUGAGCgCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 228975 0.69 0.914694
Target:  5'- cCGaGGAGGUGCGCGGGCggCGCaGGacCGGc -3'
miRNA:   3'- -GCgUCUUUACGUGCCUGa-GCG-CC--GCC- -5'
14086 5' -55.4 NC_003521.1 + 228719 0.7 0.862746
Target:  5'- uCGCAGAucAUGUuguCGGGCUgCGUGGUGa -3'
miRNA:   3'- -GCGUCUu-UACGu--GCCUGA-GCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 226354 0.66 0.966518
Target:  5'- cCGCGGGuagcGcCGCGGGa--GCGGCGGc -3'
miRNA:   3'- -GCGUCUuua-C-GUGCCUgagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 226125 0.66 0.976277
Target:  5'- -aCAGGuugGCGCGGAUgccccaccaccaGCGGCGGc -3'
miRNA:   3'- gcGUCUuuaCGUGCCUGag----------CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 223337 0.73 0.715897
Target:  5'- cCGCAGAuaGGUGCcccaGGcCUCgGCGGCGGc -3'
miRNA:   3'- -GCGUCU--UUACGug--CCuGAG-CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 222786 0.7 0.847736
Target:  5'- gCGCAGAGGaacuucUGCACGugguagcgcGGCUCGgUGGUGGa -3'
miRNA:   3'- -GCGUCUUU------ACGUGC---------CUGAGC-GCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 221802 0.71 0.839955
Target:  5'- gGCGG----GCAUGGGCUcCGuCGGCGGg -3'
miRNA:   3'- gCGUCuuuaCGUGCCUGA-GC-GCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 216832 0.68 0.940095
Target:  5'- gCGCAGGAGgucGCA---GCcCGCGGCGGa -3'
miRNA:   3'- -GCGUCUUUa--CGUgccUGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 215632 0.67 0.963367
Target:  5'- uCGguGAGGacggggcuccGCAUGG--UCGCGGCGGg -3'
miRNA:   3'- -GCguCUUUa---------CGUGCCugAGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 213059 0.68 0.940095
Target:  5'- aCGCgAGGAGcUGCGCcgucgGGACgacaUCGCGGCGc -3'
miRNA:   3'- -GCG-UCUUU-ACGUG-----CCUG----AGCGCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.