miRNA display CGI


Results 21 - 40 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 226125 0.66 0.976277
Target:  5'- -aCAGGuugGCGCGGAUgccccaccaccaGCGGCGGc -3'
miRNA:   3'- gcGUCUuuaCGUGCCUGag----------CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 84730 0.66 0.975797
Target:  5'- aCGCGGgcAcugccgucgucgucuUGCuCGGGCgcgGCGGCGGc -3'
miRNA:   3'- -GCGUCuuU---------------ACGuGCCUGag-CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 50418 0.66 0.974816
Target:  5'- aCGCGcuc---CGCGGACUCGCGGUu- -3'
miRNA:   3'- -GCGUcuuuacGUGCCUGAGCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 167190 0.66 0.974816
Target:  5'- gGCGGAGGccuucUGCuuGGGCUgGCaGGCGc -3'
miRNA:   3'- gCGUCUUU-----ACGugCCUGAgCG-CCGCc -5'
14086 5' -55.4 NC_003521.1 + 102775 0.66 0.974816
Target:  5'- gGCAGcgGcUGCGCGauGACgCGCcGGCGGc -3'
miRNA:   3'- gCGUCuuU-ACGUGC--CUGaGCG-CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 149058 0.66 0.974816
Target:  5'- uGgGGGGAUGCG-GGACcCGCGG-GGu -3'
miRNA:   3'- gCgUCUUUACGUgCCUGaGCGCCgCC- -5'
14086 5' -55.4 NC_003521.1 + 104098 0.66 0.974816
Target:  5'- aCGCGGAAGgcgGCGCGcugccagucCUCGgCGGCGu -3'
miRNA:   3'- -GCGUCUUUa--CGUGCcu-------GAGC-GCCGCc -5'
14086 5' -55.4 NC_003521.1 + 73125 0.66 0.974816
Target:  5'- -aCGGAGGUGCugcacgGCGGGggCaGCGGCGGc -3'
miRNA:   3'- gcGUCUUUACG------UGCCUgaG-CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 24434 0.66 0.974816
Target:  5'- gCGCAGGg--GCcgGCGGGCUCGgaacaggucCGcGCGGa -3'
miRNA:   3'- -GCGUCUuuaCG--UGCCUGAGC---------GC-CGCC- -5'
14086 5' -55.4 NC_003521.1 + 121768 0.66 0.974816
Target:  5'- gGUGGAugauGGUGUcggccACGGGCagGUGGCGGu -3'
miRNA:   3'- gCGUCU----UUACG-----UGCCUGagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 117932 0.66 0.974816
Target:  5'- gCGCAGGAcgGgGgaggaGGAgagcaucaUCGCGGCGGc -3'
miRNA:   3'- -GCGUCUUuaCgUg----CCUg-------AGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 115438 0.66 0.974816
Target:  5'- gCGCGGggGUG-ACGGugguugUGCGGaCGGu -3'
miRNA:   3'- -GCGUCuuUACgUGCCuga---GCGCC-GCC- -5'
14086 5' -55.4 NC_003521.1 + 110010 0.66 0.974816
Target:  5'- gGCGGGAgauGUGCACccggcucucguGGGCgCGCuGCGGu -3'
miRNA:   3'- gCGUCUU---UACGUG-----------CCUGaGCGcCGCC- -5'
14086 5' -55.4 NC_003521.1 + 101694 0.66 0.974816
Target:  5'- gGCAGAucuuguccUGUACGcucagcacGAUgCGCGGCGGg -3'
miRNA:   3'- gCGUCUuu------ACGUGC--------CUGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 123698 0.66 0.974816
Target:  5'- gCGguGGAAgaggagGCgGCGG-CUgaGCGGCGGa -3'
miRNA:   3'- -GCguCUUUa-----CG-UGCCuGAg-CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 39135 0.66 0.974566
Target:  5'- aGCGGGAugcccguGUGCugccaccgGCGGcgcaGCUCGCGGCc- -3'
miRNA:   3'- gCGUCUU-------UACG--------UGCC----UGAGCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 239363 0.66 0.974566
Target:  5'- aGCGGGAugcccguGUGCugccaccgGCGGcgcaGCUCGCGGCc- -3'
miRNA:   3'- gCGUCUU-------UACG--------UGCC----UGAGCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 100075 0.66 0.97329
Target:  5'- gGCAcGGAGgcggGCGCcucgaccgccgacgaGGACUCGC-GCGGg -3'
miRNA:   3'- gCGU-CUUUa---CGUG---------------CCUGAGCGcCGCC- -5'
14086 5' -55.4 NC_003521.1 + 77696 0.66 0.972237
Target:  5'- gGCAGAcaGAUGCcCGaGGag-GCGGCGGu -3'
miRNA:   3'- gCGUCU--UUACGuGC-CUgagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 187876 0.66 0.972237
Target:  5'- gGCGGucaccaccucgGGcgGCACGGGCg-GCGGgGGc -3'
miRNA:   3'- gCGUC-----------UUuaCGUGCCUGagCGCCgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.