miRNA display CGI


Results 41 - 60 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 187876 0.66 0.972237
Target:  5'- gGCGGucaccaccucgGGcgGCACGGGCg-GCGGgGGc -3'
miRNA:   3'- gCGUC-----------UUuaCGUGCCUGagCGCCgCC- -5'
14086 5' -55.4 NC_003521.1 + 101485 0.66 0.969473
Target:  5'- gCGCGuGAGGUGCuCGaGCa-GCGGCGGc -3'
miRNA:   3'- -GCGU-CUUUACGuGCcUGagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 168530 0.66 0.969473
Target:  5'- aGCAG----GCugGcGGCcagCGCGGCGGc -3'
miRNA:   3'- gCGUCuuuaCGugC-CUGa--GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 46444 0.66 0.969473
Target:  5'- gGCGGGGcUGCGgGGGCUgGuCGGCc- -3'
miRNA:   3'- gCGUCUUuACGUgCCUGAgC-GCCGcc -5'
14086 5' -55.4 NC_003521.1 + 24231 0.66 0.969473
Target:  5'- aGCGGGuuggGCAgCGGGCggUCG-GGCGGu -3'
miRNA:   3'- gCGUCUuua-CGU-GCCUG--AGCgCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 193130 0.66 0.969473
Target:  5'- aGuCGGAAGUGCAgaGGggagGCUCaUGGCGGg -3'
miRNA:   3'- gC-GUCUUUACGUg-CC----UGAGcGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 69730 0.66 0.969473
Target:  5'- aCGCGGuAAcgGCggGCGGGgagGCGGCGGu -3'
miRNA:   3'- -GCGUC-UUuaCG--UGCCUgagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 184174 0.66 0.969473
Target:  5'- aGCGGgAGGUGCACcGGCcCGUGGUGc -3'
miRNA:   3'- gCGUC-UUUACGUGcCUGaGCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 36411 0.66 0.969473
Target:  5'- gCGCGGg---GCGUGGAuUUCGCGGuCGGa -3'
miRNA:   3'- -GCGUCuuuaCGUGCCU-GAGCGCC-GCC- -5'
14086 5' -55.4 NC_003521.1 + 56273 0.66 0.969473
Target:  5'- gGCAGAGGU---UGGACUCGCaGGCc- -3'
miRNA:   3'- gCGUCUUUAcguGCCUGAGCG-CCGcc -5'
14086 5' -55.4 NC_003521.1 + 126291 0.66 0.966518
Target:  5'- aGCGGAAAUcgAUGGuGCcCGUGGCGGc -3'
miRNA:   3'- gCGUCUUUAcgUGCC-UGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 226354 0.66 0.966518
Target:  5'- cCGCGGGuagcGcCGCGGGa--GCGGCGGc -3'
miRNA:   3'- -GCGUCUuua-C-GUGCCUgagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 183899 0.66 0.966518
Target:  5'- gGCcGAGGUGCugGaGGCggugcUGCGGCGc -3'
miRNA:   3'- gCGuCUUUACGugC-CUGa----GCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 27853 0.66 0.966518
Target:  5'- cCGCGGucucguAAcgGCACGGAggacCUCGaccgcauggaGGCGGg -3'
miRNA:   3'- -GCGUC------UUuaCGUGCCU----GAGCg---------CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 87374 0.66 0.966518
Target:  5'- gGCcGAGGUGgA-GGACgagGCGGCGGa -3'
miRNA:   3'- gCGuCUUUACgUgCCUGag-CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 30244 0.66 0.966518
Target:  5'- uGCAGGuccGCGCGGuuGC-CGUGGCGc -3'
miRNA:   3'- gCGUCUuuaCGUGCC--UGaGCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 160307 0.67 0.964651
Target:  5'- gGCGGugg-GCACGGccaucggagccguggGCggCGCGGUGGc -3'
miRNA:   3'- gCGUCuuuaCGUGCC---------------UGa-GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 184341 0.67 0.963367
Target:  5'- cCGCAGuacUGCcucuucggGCGGGCcguggCGCGGCGc -3'
miRNA:   3'- -GCGUCuuuACG--------UGCCUGa----GCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 215632 0.67 0.963367
Target:  5'- uCGguGAGGacggggcuccGCAUGG--UCGCGGCGGg -3'
miRNA:   3'- -GCguCUUUa---------CGUGCCugAGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 148410 0.67 0.963367
Target:  5'- uGCgAGGGAgccaugGUGCGGGCggccgCGCcGGCGGc -3'
miRNA:   3'- gCG-UCUUUa-----CGUGCCUGa----GCG-CCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.